RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CCDC110Q8TBZ0 833 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KAT6AQ92794 2004 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PTPRN2Q92932 1015 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 ECT2Q9H8V3 914 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PLEKHA5Q9HAU0 1116 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 RAB6BQ9NRW1 208 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 ETNK2Q9NVF9 386 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SUFUQ9UMX1 484 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 DARSP14868 501 aaKnown RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 L1CAMP32004 1257 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 YWHAZP63104 245 aaKnown RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 PITX1P78337 314 aaPredicted RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 OLFML2BQ68BL8 750 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 PALM2Q8IXS6 379 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 BANPQ8N9N5 519 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 PHACTR1Q9C0D0 580 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 YY1AP1Q9H869 796 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 SMYD2Q9NRG4 433 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 HESX1Q9UBX0 185 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 GNEQ9Y223 722 aaKnown RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 SMIM28A0A1B0GU29 152 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 WDR91A4D1P6 747 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 A8MXQ7 604 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 METTL18O95568 372 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 LCP1P13796 627 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 STIP1P31948 543 aaKnown RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 RABGGTBP53611 331 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 ADAM17P78536 824 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 PLEKHG4Q58EX7 1191 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 ZNF534Q76KX8 674 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 PDIK1LQ8N165 341 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 TCP10LQ8TDR4 215 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 FAF2Q96CS3 445 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 RTP4Q96DX8 246 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 ABHD16BQ9H3Z7 469 aa13.92□□□□□ -0.18
CCDC3-202ENST00000378839 ALG13Q9NP73 1137 aaKnown RBP13.92□□□□□ -0.18
CCDC3-202ENST00000378839 MBLAC1A4D2B0 266 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 GLTPD2A6NH11 291 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 TREHO43280 583 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 UGT1A9O60656 530 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 SDC4P31431 198 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 GRIA1P42261 906 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 YARSP54577 528 aaKnown RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 FAAP100Q0VG06 881 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 SPARCL1Q14515 664 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 RGS9BPQ6ZS82 235 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 SESTD1Q86VW0 696 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 CENPIQ92674 756 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 UGT1A7Q9HAW7 530 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 UGT1A10Q9HAW8 530 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 UGT1A8Q9HAW9 530 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 CYLDQ9NQC7 956 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 SMG5Q9UPR3 1016 aaKnown RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 CHKBQ9Y259 395 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 SLC45A1Q9Y2W3 748 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 DERAQ9Y315 318 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 DOCK3Q8IZD9 2030 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 A6NJR5 290 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 A8MUI8 341 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 APOL1O14791 398 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 EDF1O60869 148 aaKnown RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 BEST1O76090 585 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 F2P00734 622 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 PSEN1P49768 467 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 BOLA3Q53S33 107 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 FAM47CQ5HY64 1035 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 RNF43Q68DV7 783 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 OTOAQ7RTW8 1153 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 ANKRD23Q86SG2 305 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 OSTM1Q86WC4 334 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 GTF3C2Q8WUA4 911 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 TEKT4Q8WW24 435 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 ZNF75CPQ92670 426 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 KCTD15Q96SI1 283 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 GCOM2Q9BZD3 368 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 NRDE2Q9H7Z3 1164 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 ETNK1Q9HBU6 452 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 RXFP1Q9HBX9 757 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 KANSL3Q9P2N6 904 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 FETUBQ9UGM5 382 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 STARD13Q9Y3M8 1113 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 TTLL3Q9Y4R7 772 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 TRIP12Q14669 1992 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 PDCD11Q14690 1871 aaKnown RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 CYP2F1P24903 491 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 GTF2A2P52657 109 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 BCAR1P56945 870 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 TFDP2Q14188 446 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 PDK2Q15119 407 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 OTUD1Q5VV17 481 aaPredicted RBP13.91□□□□□ -0.18
CCDC3-202ENST00000378839 ARHGAP17Q68EM7 881 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 IQSEC1Q6DN90 963 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 ASRGL1Q7L266 308 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 MPP5Q8N3R9 675 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 LRRC52Q8N7C0 313 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 MYLK2Q9H1R3 596 aa13.91□□□□□ -0.18
CCDC3-202ENST00000378839 CYP2C9P11712 490 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 RPL34P49207 117 aaKnown RBP13.9□□□□□ -0.18
CCDC3-202ENST00000378839 CCL14Q16627 93 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms