RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PRG2P13727 222 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PTPRAP18433 802 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ENDOUP21128 410 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 GRK5P34947 590 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 RPL4P36578 427 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CHAF1BQ13112 559 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 HEATR6Q6AI08 1181 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 GALNT4Q8N4A0 578 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 KAT2BQ92831 832 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TPD52L3Q96J77 140 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MSRAQ9UJ68 235 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TBC1D30Q9Y2I9 924 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 RRP15Q9Y3B9 282 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 OR10H1Q9Y4A9 318 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 NOS1APO75052 506 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SCGB2A1O75556 95 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CLEC3AO75596 197 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CSF2P04141 144 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ANXA5P08758 320 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 IL12RB1P42701 662 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 EEF1A1P68104 462 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 GUCY2DQ02846 1103 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MLLT1Q03111 559 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 HDAC1Q13547 482 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 NAE1Q13564 534 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PREPLQ4J6C6 727 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 EFHC2Q5JST6 749 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 EEF1A1P5Q5VTE0 462 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 AFTPHQ6ULP2 937 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C8orf58Q8NAV2 365 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ENKURQ8TC29 256 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 POC1BQ8TC44 478 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 KCNV2Q8TDN2 545 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 HCAR2Q8TDS4 363 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PMEPA1Q969W9 287 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PIF1Q9H611 641 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 METTL8Q9H825 291 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 BRD9Q9H8M2 597 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ERVK-5Q9HDB9 667 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF222Q9UK12 451 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 KCNJ14Q9UNX9 436 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PDS5AQ29RF7 1337 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C13orf42A0A1B0GVH6 325 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 H3BN98 237 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CES2O00748 559 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ENO3P13929 434 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TCF7P36402 384 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CASP4P49662 377 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 FXR2P51116 673 aaKnown RBP eCLIP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 HSD17B4P51659 736 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CHN2P52757 468 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 NLRP12P59046 1061 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MKRN4PQ13434 485 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM63BQ5T3F8 832 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CES5AQ6NT32 575 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C12orf56Q8IXR9 622 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PDIK1LQ8N165 341 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 UTP15Q8TED0 518 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 INTS2Q9H0H0 1204 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SPATA7Q9P0W8 599 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 RWDD2AQ9UIY3 292 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C3orf18Q9UK00 162 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ANGPT4Q9Y264 503 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 POGZQ7Z3K3 1410 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SYNGAP1Q96PV0 1343 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 A0A075B6Q4 140 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CHEK1O14757 476 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHGA12O60330 932 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TAF6P49848 677 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ST3GAL4Q11206 333 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 DALRD3Q5D0E6 543 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 FIGNL1Q6PIW4 674 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C11orf57Q6ZUT1 292 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ARID3BQ8IVW6 561 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CATSPER1Q8NEC5 780 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 OR10Q1Q8NGQ4 319 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 XAGE3Q8WTP9 111 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 LRCH3Q96II8 777 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PDCD1LG2Q9BQ51 273 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C17orf62Q9BQA9 187 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SYT15Q9BQS2 421 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ABCB9Q9NP78 766 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 DNAAF2Q9NVR5 837 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 FAM135AQ9P2D6 1515 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PLEKHG2Q9H7P9 1386 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 A0A0J9YVX5 310 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CTNND1O60716 968 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 RHOBTB3O94955 611 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CCNDBP1O95273 360 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ERCC1P07992 297 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CYP2F1P24903 491 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CXCR5P32302 372 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PPP2R2BQ00005 443 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 POU4F1Q01851 419 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 XRCC4Q13426 336 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SGCBQ16585 318 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ALG10BQ5I7T1 473 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PITRM1Q5JRX3 1037 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PRR5LQ6MZQ0 368 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 DUS1LQ6P1R4 473 aaKnown RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms