RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 CPXM1Q96SM3 734 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 SLC4A5Q9BY07 1137 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 EDEM3Q9BZQ6 932 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 RNF38Q9H0F5 515 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 RASAL2Q9UJF2 1139 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 DNMT3LQ9UJW3 386 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 NUDT5Q9UKK9 219 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 CUL9Q8IWT3 2517 aa15.56■□□□□ 0.08
COL9A1-204ENST00000370496 A0A1W2PQJ5 194 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 FAM170AA1A519 330 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 LEFTY2O00292 366 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 MDM4O15151 490 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 CHADO15335 359 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 IFNAR2P48551 515 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 RPL34P49207 117 aaKnown RBP15.55■□□□□ 0.08
COL9A1-204ENST00000370496 FMO1Q01740 532 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 EFEMP1Q12805 493 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 NAA35Q5VZE5 725 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 KLHDC10Q6PID8 442 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 TRIM72Q6ZMU5 477 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 BHLHA9Q7RTU4 235 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 MIB1Q86YT6 1006 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 SCUBE3Q8IX30 993 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 ZNF397Q8NF99 534 aaPredicted RBP15.55■□□□□ 0.08
COL9A1-204ENST00000370496 CSGALNACT1Q8TDX6 532 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 EDEM1Q92611 657 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 DNASE1L2Q92874 299 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 ZFYVE19Q96K21 471 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 LRRC3BQ96PB8 259 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 TRIM62Q9BVG3 475 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 RBSNQ9H1K0 784 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 OLA1Q9NTK5 396 aaKnown RBP15.55■□□□□ 0.08
COL9A1-204ENST00000370496 CFAP97Q9P2B7 532 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 STRIP2Q9ULQ0 834 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 CA14Q9ULX7 337 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 SH3BP1Q9Y3L3 701 aa15.55■□□□□ 0.08
COL9A1-204ENST00000370496 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.55■□□□□ 0.08
COL9A1-204ENST00000370496 PAPSS1O43252 624 aaPredicted RBP15.54■□□□□ 0.08
COL9A1-204ENST00000370496 GABBR2O75899 941 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TBX18O95935 607 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 LTFP02788 710 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TCF3P15923 654 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 CDH5P33151 784 aaPredicted RBP15.54■□□□□ 0.08
COL9A1-204ENST00000370496 NOMO3P69849 1222 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 PTPN20Q4JDL3 420 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 BSPRYQ5W0U4 402 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 SPECC1LQ69YQ0 1117 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TRIM67Q6ZTA4 783 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TOGARAM2Q6ZUX3 1019 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TMEM110Q86TL2 294 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 WDTC1Q8N5D0 677 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 RIN3Q8TB24 985 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 CPLX3Q8WVH0 158 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TRIM5Q9C035 493 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 NUCKS1Q9H1E3 243 aaKnown RBP15.54■□□□□ 0.08
COL9A1-204ENST00000370496 EPHX3Q9H6B9 360 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 ARHGEF3Q9NR81 526 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 ABCC13Q9NSE7 274 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TJP2Q9UDY2 1190 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 LSM7Q9UK45 103 aaKnown RBP15.54■□□□□ 0.08
COL9A1-204ENST00000370496 COL4A3Q01955 1670 aa15.54■□□□□ 0.08
COL9A1-204ENST00000370496 TMEM221A6NGB7 291 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 M0R296 226 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 SCAMP3O14828 347 aaKnown RBP15.53■□□□□ 0.08
COL9A1-204ENST00000370496 ERBB2P04626 1255 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 TPM1P09493 284 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 CHRNB2P17787 502 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 TRIM14Q14142 442 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 TDRD12Q587J7 1177 aaKnown RBP15.53■□□□□ 0.08
COL9A1-204ENST00000370496 OR6B2Q6IFH4 312 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 SARM1Q6SZW1 724 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 HFE2Q6ZVN8 426 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 FAM183BPQ6ZVS7 135 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 ERICH1Q86X53 443 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 GAS2L3Q86XJ1 694 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 SIX5Q8N196 739 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 CPA5Q8WXQ8 436 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 ASIC4Q96FT7 647 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 ZFRQ96KR1 1074 aaKnown RBP15.53■□□□□ 0.08
COL9A1-204ENST00000370496 MFSD1Q9H3U5 465 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 DUS2Q9NX74 493 aaKnown RBP15.53■□□□□ 0.08
COL9A1-204ENST00000370496 MARCH2Q9P0N8 246 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 WNT6Q9Y6F9 365 aa15.53■□□□□ 0.08
COL9A1-204ENST00000370496 FAM86C2PA6NEL3 165 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 CAPN9O14815 690 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 GYPCP04921 128 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 NCAM1P13591 858 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 NSFP46459 744 aaKnown RBP15.52■□□□□ 0.08
COL9A1-204ENST00000370496 ZBED6P86452 979 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 ZXDBP98169 803 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 PDGFRLQ15198 375 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 E4F1Q66K89 784 aaPredicted RBP15.52■□□□□ 0.08
COL9A1-204ENST00000370496 TRIM68Q6AZZ1 485 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 ZDHHC17Q8IUH5 632 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 VSTM4Q8IW00 320 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 ZNF276Q8N554 614 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 OSCP1Q8WVF1 389 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 ATP2A3Q93084 1043 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 AGPAT1Q99943 283 aa15.52■□□□□ 0.08
COL9A1-204ENST00000370496 WNT16Q9UBV4 365 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms