RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM174AQ8TBP5 190 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CMKLR1Q99788 373 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 EMILIN3Q9NT22 766 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 FANCLQ9NW38 375 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NKIRAS2Q9NYR9 191 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 GPSM3Q9Y4H4 160 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 HEBP2Q9Y5Z4 205 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CDY2AQ9Y6F7 541 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CDC42BPGQ6DT37 1551 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TECPR2O15040 1411 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ADAMTS12P58397 1594 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 PLD2O14939 933 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NOL4O94818 638 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 HSPA4LO95757 839 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SLC35G4P0C7Q5 338 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 STMN1P16949 149 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 UBA1P22314 1058 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 HOXA13P31271 388 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 SRP14P37108 136 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 TNFRSF4P43489 277 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 RXRGP48443 463 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 LIG3P49916 1009 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ALDH5A1P51649 535 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 PDE1AP54750 535 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NUP107P57740 925 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 FAM193AP78312 1265 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TRADDQ15628 312 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 MPPE1Q53F39 396 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 PPP1R15BQ5SWA1 713 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ATAD3BQ5T9A4 648 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NEK5Q6P3R8 708 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TRIM67Q6ZTA4 783 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TPRG1Q6ZUI0 275 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 EFL1Q7Z2Z2 1120 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 FAM129CQ86XR2 697 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CDKL3Q8IVW4 592 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 FBXL6Q8N531 539 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ZNF579Q8NAF0 562 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 METTL6Q8TCB7 284 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ADAMTS19Q8TE59 1207 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ABHD5Q8WTS1 349 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 RADILQ96JH8 1075 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 FUT8Q9BYC5 575 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 DPEP2Q9H4A9 486 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SMURF1Q9HCE7 757 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SH3GLB2Q9NR46 395 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 PXMP2Q9NR77 195 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SERTAD3Q9UJW9 196 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ANGPTL2Q9UKU9 493 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ADAMTS5Q9UNA0 930 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 PACSIN2Q9UNF0 486 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 RASSF10A6NK89 507 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 M0QYV0 167 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 VWA5AO00534 786 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CYB561D2O14569 222 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 GRM6O15303 877 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 DHX15O43143 795 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 C8AP07357 584 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CRYBB1P53674 252 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 IL2P60568 153 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 HNRNPKP61978 463 aaKnown RBP eCLIP4.24□□□□□ -1.73
USH2A-202ENST00000366942 CDC16Q13042 620 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 IFT88Q13099 833 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 GRIK5Q16478 980 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SGSM1Q2NKQ1 1148 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 C10orf76Q5T2E6 689 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 MFSD5Q6N075 450 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CNSTQ6PJW8 725 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NECAB1Q8N987 351 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ATG16L2Q8NAA4 619 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 MAPK15Q8TD08 544 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 BPIFB1Q8TDL5 484 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 REPS1Q96D71 796 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 OTUB2Q96DC9 234 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ART5Q96L15 291 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 DPYSL5Q9BPU6 564 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ADI1Q9BV57 179 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TTLL2Q9BWV7 592 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ZNF304Q9HCX3 659 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 RBAKQ9NYW8 714 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 WHRNQ9P202 907 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CEP72Q9P209 647 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 HYKKA2RU49 373 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TEX33O43247 280 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 LDOC1O95751 146 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 CD40LGP29965 261 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NUP62P37198 522 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 CTBP2P56545 445 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SIM1P81133 766 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 PLP2Q04941 152 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 IRF5Q13568 498 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 HIC1Q14526 733 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 EMC2Q15006 297 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TRIM60Q495X7 471 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ATP13A5Q4VNC0 1218 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SCARA5Q6ZMJ2 495 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 IKBIPQ70UQ0 350 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.24□□□□□ -1.73
USH2A-202ENST00000366942 DNAJB3Q8WWF6 145 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NKD1Q969G9 470 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms