RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 LPXNO60711 386 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 NCAM1P13591 858 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 PITX1P78337 314 aaPredicted RBP20.79■□□□□ 0.92
CLN3-205ENST00000359984 SLC25A52Q3SY17 297 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 MON1AQ86VX9 555 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 RHOT1Q8IXI2 618 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 NT5C3BQ969T7 300 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 TBCBQ99426 244 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 NPY6RQ99463 290 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 TTLL2Q9BWV7 592 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 NMUR1Q9HB89 426 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 GMIPQ9P107 970 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 INSL5Q9Y5Q6 135 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 MRFAP1Q9Y605 127 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 A0A1W2PQH9 124 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 MIPP30301 263 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 PCK1P35558 622 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 TWF1Q12792 350 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 TAF10Q12962 218 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 TUBB2AQ13885 445 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 PDE12Q6L8Q7 609 aaKnown RBP20.79■□□□□ 0.92
CLN3-205ENST00000359984 BEND5Q7L4P6 421 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 FBXO32Q969P5 355 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 TUBB2BQ9BVA1 445 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 FBXW11Q9UKB1 542 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 PSTPIP1O43586 416 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 GLUD1P00367 558 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 HDAC4P56524 1084 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 SLC25A11Q02978 314 aaKnown RBP20.78■□□□□ 0.92
CLN3-205ENST00000359984 LRRC38Q5VT99 294 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 DCAF12L1Q5VU92 463 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 OTUD1Q5VV17 481 aaPredicted RBP20.78■□□□□ 0.92
CLN3-205ENST00000359984 TXNRD3NBQ6F5E7 133 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 KREMEN2Q8NCW0 462 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 TRIM62Q9BVG3 475 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 PRO3102Q9H379 93 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 L2HGDHQ9H9P8 463 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 OSER1Q9NX31 292 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 CALCOCO1Q9P1Z2 691 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 STAP1Q9ULZ2 295 aa20.78■□□□□ 0.92
CLN3-205ENST00000359984 MAGED2Q9UNF1 606 aaPredicted RBP20.78■□□□□ 0.92
CLN3-205ENST00000359984 CSH1P0DML2 217 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 CSH2P0DML3 217 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 HMGA1P17096 107 aaKnown RBP20.77■□□□□ 0.92
CLN3-205ENST00000359984 DESP17661 470 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 IL1R2P27930 398 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 SULT1E1P49888 294 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 CLCN4P51793 760 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 ATP13A4Q4VNC1 1196 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 CHRDL2Q6WN34 429 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 SLC7A14Q8TBB6 771 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 PBKQ96KB5 322 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 ABCC13Q9NSE7 274 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 PCSK1NQ9UHG2 260 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 USP18Q9UMW8 372 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 EPOPA6NHQ4 379 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 GJC1P36383 396 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 ATXN1P54253 815 aaKnown RBP20.77■□□□□ 0.92
CLN3-205ENST00000359984 EPHB3P54753 998 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 RWDD2BP57060 319 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 HADHQ16836 314 aaKnown RBP20.77■□□□□ 0.92
CLN3-205ENST00000359984 BTBD8Q5XKL5 378 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 STRADAQ7RTN6 431 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 BNIPLQ7Z465 357 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 CREG2Q8IUH2 290 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 ARHGAP18Q8N392 663 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 CAPZA3Q96KX2 299 aa20.77■□□□□ 0.92
CLN3-205ENST00000359984 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.77■□□□□ 0.92
CLN3-205ENST00000359984 PLXNA3P51805 1871 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 COL4A4P53420 1690 aaPredicted RBP20.76■□□□□ 0.91
CLN3-205ENST00000359984 LAMA3Q16787 3333 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 M0QYT0 321 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 CES2O00748 559 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 CTIFO43310 598 aaKnown RBP20.76■□□□□ 0.91
CLN3-205ENST00000359984 CLASP2O75122 1294 aaKnown RBP20.76■□□□□ 0.91
CLN3-205ENST00000359984 ENDOD1O94919 500 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 TRUB2O95900 331 aaKnown RBP20.76■□□□□ 0.91
CLN3-205ENST00000359984 VEPH1Q14D04 833 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 GDPD5Q8WTR4 605 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 TIFAQ96CG3 184 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 MS4A14Q96JA4 679 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 PEBP4Q96S96 227 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 CARD9Q9H257 536 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 ZWILCHQ9H900 591 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 RRN3Q9NYV6 651 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 GREB1Q4ZG55 1949 aa20.76■□□□□ 0.91
CLN3-205ENST00000359984 C8AP07357 584 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 PYGMP11217 842 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 SMAD3P84022 425 aaKnown RBP20.75■□□□□ 0.91
CLN3-205ENST00000359984 ZNF211Q13398 564 aaPredicted RBP20.75■□□□□ 0.91
CLN3-205ENST00000359984 SCYL2Q6P3W7 929 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 CCDC149Q6ZUS6 474 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 POLNQ7Z5Q5 900 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 DNAJB7Q7Z6W7 309 aaPredicted RBP20.75■□□□□ 0.91
CLN3-205ENST00000359984 KATNAL2Q8IYT4 538 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 ADAM32Q8TC27 787 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 MYRFLQ96LU7 910 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 SLITRK1Q96PX8 696 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 NCAPGQ9BPX3 1015 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 TLR8Q9NR97 1041 aaKnown RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms