RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 OR6B2Q6IFH4 312 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 EXD1Q8NHP7 514 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ACTRT2Q8TDY3 377 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 NSMCE2Q96MF7 247 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 FAM111AQ96PZ2 611 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 TRIM43BA6NCK2 446 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 TEX33O43247 280 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 CDC40O60508 579 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 MLNP12872 115 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 IREB2P48200 963 aaKnown RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 DRG2P55039 364 aaKnown RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 DDI2Q5TDH0 399 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 C4orf50Q6ZRC1 276 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ARMC7Q9H6L4 198 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 KANSL2Q9H9L4 492 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 NFKBIL1Q9UBC1 381 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 CD320Q9NPF0 282 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF624Q9P2J8 865 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 CDC42BPGQ6DT37 1551 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 TMEM114B3SHH9 223 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 C2CD2LO14523 706 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 UBDO15205 165 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 CHRNDQ07001 517 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ATP6AP1LQ52LC2 224 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SNAP47Q5SQN1 464 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 FCGR1BQ92637 280 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 CROTQ9UKG9 612 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ABCG2Q9UNQ0 655 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 PDPK1O15530 556 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SORBS3O60504 671 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 EIF2AK2P19525 551 aaKnown RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 MTF1Q14872 753 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 HEMGNQ9BXL5 484 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 BCORL1Q5H9F3 1711 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 NCAM2O15394 837 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 GALCP54803 685 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 SP4Q02446 784 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 EIF2B5Q13144 721 aaKnown RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 CACTIN-AS1Q8N1I8 211 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 METTL13Q8N6R0 699 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 SPAG4Q9NPE6 437 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 TOPORSQ9NS56 1045 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 RUVBL2Q9Y230 463 aaKnown RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 CNTRLQ7Z7A1 2325 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 NOTOA8MTQ0 251 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 CYP19A1P11511 503 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 ANPEPP15144 967 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 ACADLP28330 430 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 SDC2P34741 201 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 CLIC5Q9NZA1 410 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 RPS6KA6Q9UK32 745 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 TRDMT1O14717 391 aaKnown RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 IL5RAQ01344 420 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 SUPT20HQ8NEM7 779 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 EPS8L3Q8TE67 593 aaKnown RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 UBXN8O00124 270 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 SERPINA1P01009 418 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 HIST1H2AGP0C0S8 130 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 HIST1H2ADP20671 130 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 MTA1Q13330 715 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 TSTA3Q13630 321 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 HIST1H2AHQ96KK5 128 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 HIST1H2AJQ99878 128 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 DDX50Q9BQ39 737 aaKnown RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 H2AFJQ9BTM1 129 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 TBC1D22BQ9NU19 505 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 USP17L12C9JPN9 530 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 USP17L21D6R901 530 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 DDX39AO00148 427 aaKnown RBP12.96□□□□□ -0.33
COL6A3-203ENST00000353578 IL2RBP14784 551 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 NIPAL1Q6NVV3 410 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 SZRD1Q7Z422 152 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 GALNT6Q8NCL4 622 aa12.96□□□□□ -0.33
COL6A3-203ENST00000353578 NOP9Q86U38 636 aaKnown RBP12.96□□□□□ -0.34
COL6A3-203ENST00000353578 GLYCTKQ8IVS8 523 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 PI4K2BQ8TCG2 481 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 PCDHB2Q9Y5E7 798 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 NEMP1O14524 444 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 SNX3O60493 162 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 ATG7O95352 703 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 EYA4O95677 639 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 VDRP11473 427 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 PDK2Q15119 407 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 RAD9BQ6WBX8 426 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 GPIHBP1Q8IV16 184 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 BTN2A2Q8WVV5 523 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 TAMM41Q96BW9 452 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 MAGEB10Q96LZ2 347 aaPredicted RBP12.96□□□□□ -0.34
COL6A3-203ENST00000353578 POLR1BQ9H9Y6 1135 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 PTPRKQ15262 1439 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 ADD2P35612 726 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 SERPINB5P36952 375 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 FMO5P49326 533 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 ADAM17P78536 824 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 PADI6Q6TGC4 694 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 LHFPL3Q86UP9 236 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 RASAL3Q86YV0 1011 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 OR6P1Q8NGX9 317 aa12.96□□□□□ -0.34
COL6A3-203ENST00000353578 SLC22A2O15244 555 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 APOC1P02654 83 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms