RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ETNK1Q9HBU6 452 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 SCNN1BP51168 640 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 PCBP1Q15365 356 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL17A1-201ENST00000353479 PPM1LQ5SGD2 360 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 MRNIPQ6NTE8 343 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 DENND1BQ6P3S1 775 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 OR5B17Q8NGF7 314 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 PCDHGB4Q9UN71 923 aa15.4■□□□□ 0.06
COL17A1-201ENST00000353479 LZTS3O60299 673 aaPredicted RBP15.39■□□□□ 0.05
COL17A1-201ENST00000353479 E2F6O75461 281 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 AMPD1P23109 780 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 CUL3Q13618 768 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 NOMO2Q5JPE7 1267 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 WDR59Q6PJI9 974 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 RIBC1Q8N443 379 aaPredicted RBP15.39■□□□□ 0.05
COL17A1-201ENST00000353479 TMEM199Q8N511 208 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 COLGALT1Q8NBJ5 622 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 TBCBQ99426 244 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 RBM22Q9NW64 420 aaKnown RBP eCLIP15.39■□□□□ 0.05
COL17A1-201ENST00000353479 WHRNQ9P202 907 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 COL20A1Q9P218 1284 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 HNRNPH2P55795 449 aaKnown RBP15.39■□□□□ 0.05
COL17A1-201ENST00000353479 DMTNQ08495 405 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 MIIPQ5JXC2 388 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 CNPY4Q8N129 248 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 LRRC43Q8N309 656 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 TBC1D19Q8N5T2 526 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 CD99L2Q8TCZ2 262 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 CAPNS2Q96L46 248 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 KCTD10Q9H3F6 313 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 ECT2Q9H8V3 914 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 TRIM66O15016 1216 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 SRP72O76094 671 aaKnown RBP15.39■□□□□ 0.05
COL17A1-201ENST00000353479 OR1E1P30953 314 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 IFNA8P32881 189 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 TMCO4Q5TGY1 634 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 EPS8L1Q8TE68 723 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 FAM161BQ96MY7 647 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 POPDC2Q9HBU9 364 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 ADGRA2Q96PE1 1338 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 HEATR9A2RTY3 570 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 LTFP02788 710 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 PTK2BQ14289 1009 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 SLC26A7Q8TE54 656 aa15.39■□□□□ 0.05
COL17A1-201ENST00000353479 IGKV6D-41A0A0C4DH26 115 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 KRT80Q6KB66 452 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 UNC93AQ86WB7 457 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 LRRC6Q86X45 466 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 KAT2BQ92831 832 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 UROC1Q96N76 676 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 ZNF558Q96NG5 402 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 ZMYM2Q9UBW7 1377 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 LRRC10BA6NIK2 292 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PHF20L1A8MW92 1017 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 RAMP2O60895 175 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 LYPLA2O95372 231 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 MIPP30301 263 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 RTP1P59025 263 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 C3orf20Q8ND61 904 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 FTHL17Q9BXU8 183 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PABPC3Q9H361 631 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 IARS2Q9NSE4 1012 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 VPS9D1Q9Y2B5 631 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PYGMP11217 842 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 MAPRE2Q15555 327 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 HYIQ5T013 277 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 SLC9A9Q8IVB4 645 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 LRRC40Q9H9A6 602 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 TRMT6Q9UJA5 497 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PLA2G4CQ9UP65 541 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 CLCA2Q9UQC9 943 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 A0A0G2JLL6 359 aaPredicted RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 ARHGAP10A1A4S6 786 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 NCAM2O15394 837 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 VCPP55072 806 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 ITGA7Q13683 1181 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 MARC1Q5VT66 337 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PRRT2Q7Z6L0 340 aaPredicted RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 MRPL40Q9NQ50 206 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 AVENQ9NQS1 362 aaPredicted RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 MRPL17Q9NRX2 175 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 TAS2R14Q9NYV8 317 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 LUC7L3O95232 432 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 ARF4P18085 180 aaPredicted RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PPP3CCP48454 512 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 PHEXP78562 749 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 KDSRQ06136 332 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 MFSD7Q6UXD7 560 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 LGI2Q8N0V4 545 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 ARMC2Q8NEN0 867 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 EPS8L3Q8TE67 593 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 CLEC4DQ8WXI8 215 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 CCDC138Q96M89 665 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 XPO6Q96QU8 1125 aaKnown RBP15.38■□□□□ 0.05
COL17A1-201ENST00000353479 COG4Q9H9E3 785 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 L2HGDHQ9H9P8 463 aa15.38■□□□□ 0.05
COL17A1-201ENST00000353479 FBXO25Q8TCJ0 367 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 FZD9O00144 591 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms