RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SCARA3Q6AZY7 606 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TMEM270Q6UE05 265 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ANO5Q75V66 913 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 AMIGO2Q86SJ2 522 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RSPH3Q86UC2 560 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TICAM1Q8IUC6 712 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 MAP4K3Q8IVH8 894 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CTAGE3PQ8IX95 158 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 GMCL1Q96IK5 515 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 APOBEC3GQ9HC16 384 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 FAIMQ9NVQ4 179 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 MKS1Q9NXB0 559 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 GGA1Q9UJY5 639 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PRR12Q9ULL5 1215 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SORCS3Q9UPU3 1222 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 DNAJC16Q9Y2G8 782 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CNTNAP4Q9C0A0 1308 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 DDTLA6NHG4 134 aaPredicted RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 E9PBE3 544 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RGL2O15211 777 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ADCY3O60266 1144 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ZC3H11AO75152 810 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS39-202ENST00000348544 TNFAIP8O95379 198 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 GDF11O95390 407 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 VNN1O95497 513 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 HLA-DRAP01903 254 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 HLA-DOAP06340 250 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 VIL1P09327 827 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 CSH1P0DML2 217 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CSH2P0DML3 217 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RBP3P10745 1247 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 IL1R2P27930 398 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ARRB2P32121 409 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 MTTPP55157 894 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 IRX4P78413 519 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PHEXP78562 749 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 DPYSL3Q14195 570 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 KCNJ11Q14654 390 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 UGCGQ16739 394 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 KCNT1Q5JUK3 1230 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 C6orf52Q5T4I8 152 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TEDDM1Q5T9Z0 273 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TATDN1Q6P1N9 297 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TRIM72Q6ZMU5 477 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 Q6ZNX1 250 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 MIER3Q7Z3K6 550 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ADGRF2Q8IZF7 708 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 BBS5Q8N3I7 341 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PHTF2Q8N3S3 785 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 FBXW8Q8N3Y1 598 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ARFGAP1Q8N6T3 406 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 GMCL1P1Q8NEA9 526 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RSAD2Q8WXG1 361 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 BSNDQ8WZ55 320 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SIKE1Q9BRV8 207 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TRIM56Q9BRZ2 755 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 PCDH18Q9HCL0 1135 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TMOD2Q9NZR1 351 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ZBTB21Q9ULJ3 1066 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PSMD13Q9UNM6 376 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PCDHB4Q9Y5E5 795 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 STRCQ7RTU9 1775 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 LOC100653049A0A140TA62 436 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 DHX15O43143 795 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 ZNF189O75820 626 aaPredicted RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 KRT34O76011 436 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 KRT37O76014 449 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ITGB5P18084 799 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ATP2B4P23634 1241 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 STT3AP46977 705 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 NPTX2P47972 431 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SOX10P56693 466 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 YWHAZP63104 245 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 COG7P83436 770 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 BTG3Q14201 252 aaPredicted RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 ACAP1Q15027 740 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CNGA3Q16281 694 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 BRDTQ58F21 947 aaPredicted RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 HSP90AA5PQ58FG0 334 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 VWA5B1Q5TIE3 1220 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TDRD10Q5VZ19 366 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 MBLAC2Q68D91 279 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 APOBEC3HQ6NTF7 200 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 BBS12Q6ZW61 710 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 LILRA2Q8N149 483 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SMYD1Q8NB12 490 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RAB3IL1Q8TBN0 382 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 TMIGD2Q96BF3 282 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 MAML3Q96JK9 1138 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CSRNP1Q96S65 589 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 FAM213AQ9BRX8 229 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SLC2A11Q9BYW1 496 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 POPDC2Q9HBU9 364 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PNPLA8Q9NP80 782 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CREBZFQ9NS37 354 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 THAP1Q9NVV9 213 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RIMS3Q9UJD0 308 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 RAB26Q9ULW5 256 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PCDHAC2Q9Y5I4 1007 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 QSER1Q2KHR3 1735 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms