RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 THRBP10828 461 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 PTPN1P18031 435 aaKnown RBP6.34□□□□□ -1.39
VCAN-203ENST00000343200 PAICSP22234 425 aaKnown RBP6.34□□□□□ -1.39
VCAN-203ENST00000343200 STIP1P31948 543 aaKnown RBP6.34□□□□□ -1.39
VCAN-203ENST00000343200 IFNGR2P38484 337 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 CENPAP49450 140 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 MSLNQ13421 630 aaPredicted RBP6.34□□□□□ -1.39
VCAN-203ENST00000343200 ACAP1Q15027 740 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 HERC3Q15034 1050 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 GALNTL6Q49A17 601 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 HSD17B12Q53GQ0 312 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 TWF2Q6IBS0 349 aaKnown RBP6.34□□□□□ -1.39
VCAN-203ENST00000343200 CYP4V2Q6ZWL3 525 aaPredicted RBP6.34□□□□□ -1.39
VCAN-203ENST00000343200 OTOAQ7RTW8 1153 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 LRRC71Q8N4P6 559 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 ZCWPW1Q9H0M4 648 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.34□□□□□ -1.39
VCAN-203ENST00000343200 CLCA2Q9UQC9 943 aa6.34□□□□□ -1.39
VCAN-203ENST00000343200 SYNDIG1LA6NDD5 238 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 G3V2T6 193 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 TTLL1O95922 423 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 ERP29P30040 261 aaKnown RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 SPRP35270 261 aaPredicted RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 DEFA5Q01523 94 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 SLC29A2Q14542 456 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 RHEBQ15382 184 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 INO80DQ53TQ3 878 aaPredicted RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 XKRXQ6PP77 449 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 PAGE5Q96GU1 130 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 OSBPL6Q9BZF3 934 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 SAV1Q9H4B6 383 aaPredicted RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 COPS7BQ9H9Q2 264 aaPredicted RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 INTS10Q9NVR2 710 aaKnown RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 PCDHA4Q9UN74 947 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 SLCO1B7G3V0H7 640 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 PDPK1O15530 556 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 MYCP01106 439 aaPredicted RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 SOX11P35716 441 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 PIK3CBP42338 1070 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 CNTN1Q12860 1018 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 ARID5BQ14865 1188 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 XKR9Q5GH70 373 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 HAGHLQ6PII5 290 aaPredicted RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 MACC1Q6ZN28 852 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 TTC39CQ8N584 583 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 ATXN2LQ8WWM7 1075 aaKnown RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 DPF3Q92784 378 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 FAM149B1Q96BN6 582 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 ERP44Q9BS26 406 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 KCNF1Q9H3M0 494 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 A1CFQ9NQ94 594 aaKnown RBP6.34□□□□□ -1.4
VCAN-203ENST00000343200 POLIQ9UNA4 740 aa6.34□□□□□ -1.4
VCAN-203ENST00000343200 KIAA1210Q9ULL0 1709 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 ZNF185O15231 689 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 CHRNGP07510 517 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 NPEPPSP55786 919 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 DPYSQ14117 519 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 CLEC17AQ6ZS10 378 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 DHDDSQ86SQ9 333 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 C12orf56Q8IXR9 622 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 UTP15Q8TED0 518 aaKnown RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 SCFD2Q8WU76 684 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 CDC42BPGQ6DT37 1551 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 SPTAN1Q13813 2472 aaKnown RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 TNCP24821 2201 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 RGSL1A5PLK6 1076 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 C2orf74A8MZ97 194 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 STX16-NPEPL1H3BU86 382 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 STX16O14662 325 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 SIN3BO75182 1162 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 CCND2P30279 289 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 GUCA1AP43080 201 aaPredicted RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 RIPK1Q13546 671 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 FAM160B1Q5W0V3 765 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 CXXC5Q7LFL8 322 aaKnown RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 TMEM17Q86X19 198 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 ZNF280BQ86YH2 543 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 NAT14Q8WUY8 206 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 HDAC2Q92769 488 aaKnown RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 CAVIN3Q969G5 261 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 OXNAD1Q96HP4 312 aaPredicted RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 FRMPD1Q5SYB0 1578 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 C2orf71A6NGG8 1288 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 H3BMM5 538 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 PLK4O00444 970 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 WFS1O76024 890 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 LDLRP01130 860 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 PSAPP07602 524 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 PPP2R1BP30154 601 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 CHKAP35790 457 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 NYAP1Q6ZVC0 841 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 LINC00523Q86TU6 105 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 RBM12BQ8IXT5 1001 aaKnown RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 GPD1LQ8N335 351 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 ZNF615Q8N8J6 731 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 SPERTQ8NA61 448 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 ASAP3Q8TDY4 903 aa6.33□□□□□ -1.4
VCAN-203ENST00000343200 JARID2Q92833 1246 aaPredicted RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 HEXIM2Q96MH2 286 aaKnown RBP6.33□□□□□ -1.4
VCAN-203ENST00000343200 NACC1Q96RE7 527 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms