RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 WHRNQ9P202 907 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 WDR35Q9P2L0 1181 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 USP18Q9UMW8 372 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 PRG3Q9Y2Y8 225 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 KATNA1O75449 491 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 ABCD1P33897 745 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 ADARP55265 1226 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 ABCE1P61221 599 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 IL5RAQ01344 420 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 AUHQ13825 339 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 UGP2Q16851 508 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 TMPRSS6Q8IU80 811 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 SPATA6LQ8N4H0 392 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 RDM1Q8NG50 284 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 TRPC4APQ8TEL6 797 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 ZNF184Q99676 751 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 MECRQ9BV79 373 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 VPS45Q9NRW7 570 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 SCN3BQ9NY72 215 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 NUDT5Q9UKK9 219 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 REXO2Q9Y3B8 237 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 TULP4Q9NRJ4 1543 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SETBP1Q9Y6X0 1596 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 WDR27A2RRH5 827 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 EIF3DO15371 548 aaKnown RBP eCLIP8.95□□□□□ -0.98
RTN3-202ENST00000339997 BUD23O43709 281 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 PROSCO94903 275 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 FAM58BPP0C7Q3 252 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 HSPA1AP0DMV8 641 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 HSPA1BP0DMV9 641 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 STIP1P31948 543 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 BAG6P46379 1132 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 ITPK1Q13572 414 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 PDK1Q15118 436 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 CEP78Q5JTW2 689 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 STK32CQ86UX6 486 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 ZNF34Q8IZ26 560 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 ASAP3Q8TDY4 903 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 TRIM54Q9BYV2 358 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 GDF3Q9NR23 364 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 IL17RBQ9NRM6 502 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 CISHQ9NSE2 258 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SOX13Q9UN79 622 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 PREX1Q8TCU6 1659 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 ATP6AP2A0A1C7CYW4 349 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 CYTH3O43739 400 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 ATP6AP2O75787 350 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 MYO1DO94832 1006 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 HIST1H2AGP0C0S8 130 aaPredicted RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 HIST1H2ADP20671 130 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 PSMA3P25788 255 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 EFNA5P52803 228 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 CNGA2Q16280 664 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 PREPLQ4J6C6 727 aaPredicted RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 SCUBE3Q8IX30 993 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 OR6Y1Q8NGX8 325 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 EDEM1Q92611 657 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 JADE3Q92613 823 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 HIST1H2AHQ96KK5 128 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 HIST1H2AJQ99878 128 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 H2AFJQ9BTM1 129 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 BLOC1S4Q9NUP1 217 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 KIF1BO60333 1816 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 DIP2CQ9Y2E4 1556 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 C5orf58C9J3I9 102 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 CLOCKO15516 846 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 HNRNPRO43390 633 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 ZNF189O75820 626 aaPredicted RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 IMPDH2P12268 514 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SLC1A6P48664 564 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 TTC7BQ86TV6 843 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 ZCCHC7Q8N3Z6 543 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 UTP15Q8TED0 518 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 SEPT1Q8WYJ6 367 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 CLPTM1LQ96KA5 538 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 RNF145Q96MT1 663 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SEPT5Q99719 369 aaPredicted RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 TBCDQ9BTW9 1192 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 TEX12Q9BXU0 123 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 DCLK3Q9C098 648 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 REXO4Q9GZR2 422 aaKnown RBP8.95□□□□□ -0.98
RTN3-202ENST00000339997 ZNF556Q9HAH1 456 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 PRKAG2Q9UGJ0 569 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 DOLKQ9UPQ8 538 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SPATA31A3Q5VYP0 1347 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SRCAPQ6ZRS2 3230 aa8.95□□□□□ -0.98
RTN3-202ENST00000339997 SDR42E2A6NKP2 422 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 C2CD2LO14523 706 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ZNF197O14709 1029 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 EXTL3O43909 919 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 NBNO60934 754 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 UBAP2LQ14157 1087 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 TRMT5Q32P41 509 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 PRR5LQ6MZQ0 368 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 CCDC149Q6ZUS6 474 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SH3RF1Q7Z6J0 888 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 FBXO33Q7Z6M2 555 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 MILR1Q7Z6M3 343 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 PATL1Q86TB9 770 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 SNX31Q8N9S9 440 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms