RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SPOCK3Q9BQ16 436 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RTP3Q9BQQ7 232 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PITPNM3Q9BZ71 974 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PAPOLBQ9NRJ5 636 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TRPM7Q96QT4 1865 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 VWA5AO00534 786 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MCM7P33993 719 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 OCRLQ01968 901 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GALNT3Q14435 633 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SPANXN2Q5MJ10 180 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CCDC33Q8N5R6 958 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM35BQ8NCS4 154 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 WDR36Q8NI36 951 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SLC30A5Q8TAD4 765 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DCAF4Q8WV16 495 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 C12orf66Q96MD2 445 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF560Q96MR9 790 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GTPBP2Q9BX10 602 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MCOLN1Q9GZU1 580 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 USP29Q9HBJ7 922 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 EMC3Q9P0I2 261 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SH3BP4Q9P0V3 963 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RUVBL2Q9Y230 463 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ACTL7BQ9Y614 415 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 VNN2O95498 520 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CD4P01730 458 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 HNRNPCP07910 306 aaKnown RBP eCLIP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 HSMCR30P0CW71 290 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ATP5JP18859 108 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MAP4P27816 1152 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 BRCC3P46736 316 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 HSD17B4P51659 736 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TMBIM6P55061 237 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 INHBCP55103 352 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RPL10AP62906 217 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MORC3Q14149 939 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DGKHQ86XP1 1220 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MYLK4Q86YV6 388 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DCP1BQ8IZD4 617 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 AOPEPQ8N6M6 819 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 POF1BQ8WVV4 589 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FAM151AQ8WW52 585 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 E2F7Q96AV8 911 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJC1Q96KC8 554 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 UHRF1Q96T88 793 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 KCNS3Q9BQ31 491 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 C1orf50Q9BV19 199 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ANKHQ9HCJ1 492 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GPR75-ASB3A0A0A6YYF3 556 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 E2F6O75461 281 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MT-ND3P03897 115 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CREB1P16220 341 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ATP1A2P50993 1020 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TMED2Q15363 201 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MGAT5BQ3V5L5 792 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TCEAL5Q5H9L2 206 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SCYL2Q6P3W7 929 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NOTUMQ6P988 496 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 P3H2Q8IVL5 708 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MAFAQ8NHW3 353 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MYCBPAPQ8TBZ2 947 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FAR1Q8WVX9 515 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FKBP10Q96AY3 582 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NLNQ9BYT8 704 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SLC39A8Q9C0K1 460 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 WDR41Q9HAD4 459 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GPAMQ9HCL2 828 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM260Q9NX78 707 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ANKRD6Q9Y2G4 727 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZBTB12Q9Y330 459 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ASB3Q9Y575 518 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GMNCA6NCL1 334 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MOXD2PA6NHM9 499 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MEFVO15553 781 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TIMM44O43615 452 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 USP1O94782 785 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RPS6KB1P23443 525 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PTGS2P35354 604 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PTPN5P54829 565 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ACTR3P61158 418 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 HAND2P61296 217 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CDK17Q00537 523 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SCRN3Q0VDG4 424 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM132DQ14C87 1099 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SLC39A14Q15043 492 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 EDRF1Q3B7T1 1238 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GRHL2Q6ISB3 625 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NFRKBQ6P4R8 1299 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DACH2Q96NX9 599 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RNF146Q9NTX7 359 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MAN1B1Q9UKM7 699 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 VAV3Q9UKW4 847 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CROCCQ5TZA2 2017 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RNF103-CHMP3A0A140T963 221 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PSMD12O00232 456 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PLK4O00444 970 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MAP3K6O95382 1288 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SLFN14P0C7P3 912 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NCAM1P13591 858 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CCDC130P13994 396 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms