RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CCDC70Q6NSX1 233 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CCDC137Q6PK04 289 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 KCNT2Q6UVM3 1135 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 RNF19BQ6ZMZ0 732 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 FAM131BQ86XD5 332 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 JAMLQ86YT9 394 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CCDC185Q8N715 623 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 KCTD6Q8NC69 237 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CMASQ8NFW8 434 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 UBE2Q2Q8WVN8 375 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 IFT81Q8WYA0 676 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CENPIQ92674 756 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 BADQ92934 168 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ZNF689Q96CS4 500 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 IGSF21Q96ID5 467 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 SLC2A13Q96QE2 648 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 NPY6RQ99463 290 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PLVAPQ9BX97 442 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CALN1Q9BXU9 219 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 DCLK3Q9C098 648 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 DPH5Q9H2P9 285 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CNGB3Q9NQW8 809 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ARGLU1Q9NWB6 273 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 DDX56Q9NY93 547 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 CXXC1Q9P0U4 656 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 MTUS1Q9ULD2 1270 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PTPRSQ13332 1948 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 M0QYT0 321 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 DAPK3O43293 454 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 TBC1D4O60343 1298 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 SASH3O75995 380 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 FBXO21O94952 628 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 EFEMP2O95967 443 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 LTFP02788 710 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 FAM153BP0C7A2 387 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 SYN1P17600 705 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CHRNA3P32297 505 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ARSEP51690 589 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 USP46P62068 366 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 NME3Q13232 169 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 BTG3Q14201 252 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 CLUL1Q15846 466 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 SLC25A52Q3SY17 297 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 FAM153CQ494X1 144 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ODF2Q5BJF6 829 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 BEND6Q5SZJ8 279 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 FAM182AQ5T1J6 154 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 TMCO3Q6UWJ1 677 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 C4orf50Q6ZRC1 276 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 FAM43BQ6ZT52 329 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 ZNF365Q70YC5 407 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 B4GALNT4Q76KP1 1039 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ARCQ7LC44 396 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PRUNE1Q86TP1 453 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 C7orf61Q8IZ16 206 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 DCP1BQ8IZD4 617 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 PYROXD2Q8N2H3 581 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 C12orf50Q8NA57 414 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 SLC7A14Q8TBB6 771 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 RIN2Q8WYP3 895 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 TTPALQ9BTX7 342 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 UBXN6Q9BZV1 441 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 NEUROG2Q9H2A3 272 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 LRRC19Q9H756 370 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 C10orf88Q9H8K7 445 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 POPDC2Q9HBU9 364 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 IL23AQ9NPF7 189 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ANLNQ9NQW6 1124 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 GDF3Q9NR23 364 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PIGVQ9NUD9 493 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 FAM153AQ9UHL3 310 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 NUDT5Q9UKK9 219 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 NFU1Q9UMS0 254 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PCDHB5Q9Y5E4 795 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CDY1Q9Y6F8 540 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PATJQ8NI35 1801 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 WDR27A2RRH5 827 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MTMR11A4FU01 709 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 OR6C75A6NL08 312 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 BHMG1C9JSJ3 638 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 I6L893 689 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 CAPN9O14815 690 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CST8O60676 142 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ENDOD1O94919 500 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 NCAM1P13591 858 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PECAM1P16284 738 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 IL4RP24394 825 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ECHS1P30084 290 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 OR1D2P34982 312 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 NOS2P35228 1153 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 COPS2P61201 443 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ELAVL2Q12926 359 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 MTMR3Q13615 1198 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DPYSL3Q14195 570 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TRIP13Q15645 432 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 PPP2R5EQ16537 467 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 NFE2Q16621 373 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 TAZQ16635 292 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PPP6R3Q5H9R7 873 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 BSPRYQ5W0U4 402 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms