RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 RPL10AP62906 217 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 CDKL1Q00532 357 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 STX3Q13277 289 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 DCTN2Q13561 401 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 DCAF8Q5TAQ9 597 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 MAP3K21Q5TCX8 1036 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ATG16L1Q676U5 607 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF772Q68DY9 489 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 PGM2L1Q6PCE3 622 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 MAVSQ7Z434 540 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 NDUFAF2Q8N183 169 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 RNF148Q8N7C7 305 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TFB1MQ8WVM0 346 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 MAN1C1Q9NR34 630 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 PARVAQ9NVD7 372 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 SIRPGQ9P1W8 387 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 AP4B1Q9Y6B7 739 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF536O15090 1300 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 PTPRJQ12913 1337 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ITGB5P18084 799 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TNNI1P19237 187 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 IL1R2P27930 398 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 CCR3P51677 355 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 GCNT1Q02742 428 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 CYTH1Q15438 398 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 PPP1R14CQ8TAE6 165 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 BSNDQ8WZ55 320 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF512Q96ME7 567 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 IFT122Q9HBG6 1241 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 XAB2Q9HCS7 855 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 INIPQ9NRY2 104 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 NDUFA13Q9P0J0 144 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 CIDEBQ9UHD4 219 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 PCSK1NQ9UHG2 260 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 COL24A1Q17RW2 1714 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 PMM2O15305 246 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 SF3B1O75533 1304 aaKnown RBP eCLIP13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 HLA-DRAP01903 254 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 ACO1P21399 889 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 DPYSL3Q14195 570 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 SLC17A6Q9P2U8 582 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 TJP2Q9UDY2 1190 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 ACOT2P49753 483 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 SERPINB8P50452 374 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 PSMD7P51665 324 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 ANKDD1AQ495B1 522 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 TTC39BQ5VTQ0 682 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 PCGF5Q86SE9 256 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 MARVELD2Q8N4S9 558 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 TMEM161BQ8NDZ6 487 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 TUT1Q9H6E5 874 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 TEX264Q9Y6I9 313 aa13.94□□□□□ -0.18
CCDC88C-201ENST00000331194 C3orf70A6NLC5 250 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 PPEF1O14829 653 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 AP1G1O43747 822 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 C1QAP02745 245 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 RBP3P10745 1247 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ECE1P42892 770 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 NPTX2P47972 431 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 MRPS22P82650 360 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 KCTD21Q4G0X4 260 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 TRMT10BQ6PF06 316 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 KBTBD6Q86V97 674 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF410Q86VK4 478 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 SLC26A11Q86WA9 606 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 CPNE9Q8IYJ1 553 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ZBTB8BQ8NAP8 495 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 COPS7BQ9H9Q2 264 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 PLAC1Q9HBJ0 212 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 HMX2A2RU54 273 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 NDC80O14777 642 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 MAFGO15525 162 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 SNNO75324 88 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 IL1BP01584 269 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 BPGMP07738 259 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 SNRPAP09012 282 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 PDGFRBP09619 1106 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 CSH1P0DML2 217 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 CSH2P0DML3 217 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 YWHABP31946 246 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ARRB2P32121 409 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 OGFRL1Q5TC84 451 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 TDRD10Q5VZ19 366 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 B3GNT9Q6UX72 402 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 KIAA0319LQ8IZA0 1049 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ADGRF2Q8IZF7 708 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 IL31RAQ8NI17 732 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 MFSD14AQ96MC6 490 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 C17orf75Q9HAS0 396 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 NYAP2Q9P242 653 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 DOLKQ9UPQ8 538 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 GNEQ9Y223 722 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 TTLL3Q9Y4R7 772 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 CEPT1Q9Y6K0 416 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 DCXO43602 365 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 TBC1D12O60347 775 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 RPL10P27635 214 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 GJA8P48165 433 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 SH3BGRP55822 239 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 SULT2A1Q06520 285 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms