RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 C15orf52Q6ZUT6 534 aaKnown RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 SPATA2LQ8IUW3 424 aaPredicted RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 OR6Y1Q8NGX8 325 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 ZNF75CPQ92670 426 aaPredicted RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 KIAA1683Q9H0B3 1180 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 SLC38A7Q9NVC3 462 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 STARD13Q9Y3M8 1113 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 PIK3C2AO00443 1686 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 FAM86B1E9PN63 330 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 PHGDHO43175 533 aaKnown RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 FAM86B2P0C5J1 330 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 RECQLP46063 649 aaPredicted RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 PDK1Q15118 436 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 SV2CQ496J9 727 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 SEZ6Q53EL9 994 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 NOTUMQ6P988 496 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 BBS7Q8IWZ6 715 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 TCP10LQ8TDR4 215 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 RAD21L1Q9H4I0 556 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 RMI1Q9H9A7 625 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 NDFIP2Q9NV92 336 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 GAKO14976 1311 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 TBKBP1A7MCY6 615 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 DFFAO00273 331 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 PDE2AO00408 941 aaPredicted RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 ITGB3P05106 788 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 CYP11B1P15538 503 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 GPD1P21695 349 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 ST13P50502 369 aaKnown RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 ZNF157P51786 506 aaPredicted RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 CNGA2Q16280 664 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 SHCBP1Q8NEM2 672 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 UBA3Q8TBC4 463 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 TBC1D10AQ9BXI6 508 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 FASP25445 335 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TTKP33981 857 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 GRIK1P39086 918 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 RPL5P46777 297 aaKnown RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 MMRN1Q13201 1228 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TCHHL1Q5QJ38 904 aaPredicted RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 CEP44Q9C0F1 390 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 NRDE2Q9H7Z3 1164 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 PLGRKTQ9HBL7 147 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 HMG20AQ9NP66 347 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 FAM237AA0A1B0GTK4 181 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 GRIN3BO60391 1043 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 BLVRAP53004 296 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 NCKAP1LP55160 1127 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 FKBP1AP62942 108 aaKnown RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 MCL1Q07820 350 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 FAM83EQ2M2I3 478 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 SPDYAQ5MJ70 313 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 ELMSAN1Q6PJG2 1045 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 LENG1Q96BZ8 264 aaPredicted RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 DUSP9Q99956 384 aaKnown RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 NUDT12Q9BQG2 462 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 BLOC1S4Q9NUP1 217 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 IMPAD1Q9NX62 359 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 FMN2Q9NZ56 1722 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 LINC00854A0A1B0GVQ3 168 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 HEATR9A2RTY3 570 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 ZNF197O14709 1029 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 CLOCKO15516 846 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 NBNO60934 754 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 VIL1P09327 827 aaKnown RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 FDFT1P37268 417 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TFDP3Q5H9I0 405 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TBCELQ5QJ74 424 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 ARMC4Q5T2S8 1044 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 DENND1BQ6P3S1 775 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TAS2R42Q7RTR8 314 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 SH3RF1Q7Z6J0 888 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 DIS3LQ8TF46 1054 aaKnown RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 LRMDAQ9H2I8 198 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 NINJ2Q9NZG7 142 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 SHOC2Q9UQ13 582 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 NPTXRO95502 500 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TAL1P17542 331 aaPredicted RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 RHBDL3P58872 404 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 GTF2H3Q13889 308 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 RGS21Q2M5E4 152 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 ANO4Q32M45 955 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 CYP4A22Q5TCH4 519 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 RNF219Q5W0B1 726 aaPredicted RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 OR8H2Q8N162 312 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 EXD1Q8NHP7 514 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 TAS1R2Q8TE23 839 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 LRRC39Q96DD0 335 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 NDNQ99608 321 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 CNPY3Q9BT09 278 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 RRN3Q9NYV6 651 aa11.85□□□□□ -0.51
VPS39-201ENST00000318006 RGPD8O14715 1765 aaPredicted RBP11.85□□□□□ -0.51
VPS39-201ENST00000318006 PDZK1P1A8MUH7 402 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 EVPLLA8MZ36 301 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 GOLGA8TH3BQL2 631 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 SMIM22K7EJ46 135 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 CBFA2T3O75081 653 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 PCSK1P29120 753 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 PGM5Q15124 567 aa11.84□□□□□ -0.51
VPS39-201ENST00000318006 GOLGA7BQ2TAP0 167 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms