RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ADH1CP00326 375 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 VDRP11473 427 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 BRD2P25440 801 aaKnown RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 ATP5C1P36542 298 aaKnown RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 SLC6A11P48066 632 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 BST2Q10589 180 aaKnown RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 CLEC17AQ6ZS10 378 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 CREBRFQ8IUR6 639 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 SFTPA1Q8IWL2 248 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 RBBP8NLQ8NC74 664 aaPredicted RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 EHBP1Q8NDI1 1231 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 NDRG1Q92597 394 aaKnown RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 KREMEN1Q96MU8 473 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 ZSWIM1Q9BR11 485 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 ULBP1Q9BZM6 244 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 EPC1Q9H2F5 836 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 LMBRD1Q9NUN5 540 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 TBC1D14Q9P2M4 693 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 HESX1Q9UBX0 185 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 SMG5Q9UPR3 1016 aaKnown RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 PAEPP09466 180 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 PXNP49023 591 aaPredicted RBP17.14■□□□□ 0.33
LSM1-201ENST00000311351 TKTL1P51854 596 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 NRLP54845 237 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 SEC13P55735 322 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 SLC8A3P57103 927 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 KDSRQ06136 332 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 ADIGQ0VDE8 80 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 SRSF5Q13243 272 aaKnown RBP17.14■□□□□ 0.33
LSM1-201ENST00000311351 BHLHA9Q7RTU4 235 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 MIB1Q86YT6 1006 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 IRF2BP1Q8IU81 584 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 MLKLQ8NB16 471 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 EXOC4Q96A65 974 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 HINFPQ9BQA5 517 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 CRACR2AQ9BSW2 395 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 RASAL2Q9UJF2 1139 aa17.14■□□□□ 0.33
LSM1-201ENST00000311351 PSEN1P49768 467 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 ZNF132P52740 706 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 YWHAGP61981 247 aaKnown RBP eCLIP17.13■□□□□ 0.33
LSM1-201ENST00000311351 GCNT1Q02742 428 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 LPAL2Q16609 132 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 FBXO43Q4G163 708 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 PKDCCQ504Y2 493 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 GJB7Q6PEY0 223 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 KLHDC10Q6PID8 442 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 DCLK2Q8N568 766 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 OTUB2Q96DC9 234 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 HHIPQ96QV1 700 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 UBXN6Q9BZV1 441 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 SPHK2Q9NRA0 654 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 CLIC5Q9NZA1 410 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 DNMT3LQ9UJW3 386 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.13■□□□□ 0.33
LSM1-201ENST00000311351 SPAG17Q6Q759 2223 aa17.13■□□□□ 0.33
LSM1-201ENST00000311351 K7EQS6 105 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 M0QYV0 167 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 ZBED1O96006 694 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 SETSIPP0DME0 302 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 RALAP11233 206 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 PLA2G4AP47712 749 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 RGS7P49802 495 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 APBA1Q02410 837 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 GOLGA8FQ08AF8 430 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 GOLGA8DPQ0D2H9 430 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 EFEMP1Q12805 493 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 LCLAT1Q6UWP7 414 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 HTR3DQ70Z44 454 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 TMEM25Q86YD3 366 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 NAT16Q8N8M0 369 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 SECISBP2LQ93073 1101 aaKnown RBP17.12■□□□□ 0.33
LSM1-201ENST00000311351 LRRC4Q9HBW1 653 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 LSM7Q9UK45 103 aaKnown RBP17.12■□□□□ 0.33
LSM1-201ENST00000311351 SLC8A2Q9UPR5 921 aa17.12■□□□□ 0.33
LSM1-201ENST00000311351 MYO18AQ92614 2054 aaKnown RBP17.12■□□□□ 0.33
LSM1-201ENST00000311351 SDK1Q7Z5N4 2213 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 PIK3R2O00459 728 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 HOXC11O43248 304 aaPredicted RBP17.11■□□□□ 0.33
LSM1-201ENST00000311351 HRO43593 1189 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 ATG13O75143 517 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 STC2O76061 302 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 HMBSP08397 361 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 KRT5P13647 590 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 MTIF2P46199 727 aaKnown RBP17.11■□□□□ 0.33
LSM1-201ENST00000311351 GAD2Q05329 585 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 TPD52L1Q16890 204 aaPredicted RBP17.11■□□□□ 0.33
LSM1-201ENST00000311351 ANO4Q32M45 955 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 C2orf27AQ580R0 203 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 HSP90AA4PQ58FG1 418 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 PM20D1Q6GTS8 502 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 TRIM65Q6PJ69 517 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 Q6ZNB5 142 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 PRR23BQ6ZRT6 265 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 RSRC2Q7L4I2 434 aaKnown RBP17.11■□□□□ 0.33
LSM1-201ENST00000311351 TADA2BQ86TJ2 420 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 LONP2Q86WA8 852 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 ETFBKMTQ8IXQ9 262 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 SIX6OS1Q8N1H7 587 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 ARHGAP18Q8N392 663 aa17.11■□□□□ 0.33
LSM1-201ENST00000311351 PHTF2Q8N3S3 785 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms