RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 PCP11498 1178 aaKnown RBP12.1□□□□□ -0.47
SNIP1-201ENST00000296215 HLA-DPA1P20036 260 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 ADD2P35612 726 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 TCIRG1Q13488 830 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 ZBED5Q49AG3 693 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 BROXQ5VW32 411 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 FKBP9P1Q75LS8 142 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 IFNEQ86WN2 208 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 FAM109AQ8N4B1 249 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 DHRSXQ8N5I4 330 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 PPM1NQ8N819 430 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 PCDHGC3Q9UN70 934 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 CCDC78A2IDD5 438 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 PRSS44E7EML9 344 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 ECE2O60344 883 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 QARSP47897 775 aaKnown RBP12.1□□□□□ -0.47
SNIP1-201ENST00000296215 ITGA8P53708 1063 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 CCDC58Q4VC31 144 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 DCAF6Q58WW2 860 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 CDKAL1Q5VV42 579 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 LRRC71Q8N4P6 559 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 PUS7LQ9H0K6 701 aaKnown RBP12.1□□□□□ -0.47
SNIP1-201ENST00000296215 EFCAB1Q9HAE3 211 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 PAQR5Q9NXK6 330 aaPredicted RBP12.1□□□□□ -0.47
SNIP1-201ENST00000296215 CDY2AQ9Y6F7 541 aa12.1□□□□□ -0.47
SNIP1-201ENST00000296215 A6NL46 340 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 SNAP23O00161 211 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 DYRK3O43781 588 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 AKR1B1P15121 316 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 TAC1P20366 129 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 CLCA4Q14CN2 919 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 PROSER3Q2NL68 480 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 FAM209AQ5JX71 171 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 ZNF746Q6NUN9 644 aaPredicted RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 METTL2BQ6P1Q9 378 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 C12orf56Q8IXR9 622 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 OR9Q1Q8NGQ5 310 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 RFFLQ8WZ73 363 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 OGDHLQ9ULD0 1010 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 FAM92AA1XBS5 289 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 TLR3O15455 904 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 NAB1Q13506 487 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 TAB1Q15750 504 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 PDK4Q16654 411 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 FAM47CQ5HY64 1035 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 CRTC3Q6UUV7 619 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 ABRAXAS1Q6UWZ7 409 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 PDSS2Q86YH6 399 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 FAR1Q8WVX9 515 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 SLC9A6Q92581 669 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 JCADQ9P266 1359 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 ADAM30Q9UKF2 790 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 AURKAO14965 403 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 OR5F1O95221 314 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 MMP1P03956 469 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 RPL26P61254 145 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 SPIRE1Q08AE8 756 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 TRIM71Q2Q1W2 868 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 FAM45BPQ6NSW5 357 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 RBM15BQ8NDT2 890 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 AGR3Q8TD06 166 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 TRUB1Q8WWH5 349 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 PSPC1Q8WXF1 523 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 DLG3Q92796 817 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 NGLY1Q96IV0 654 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 ARL5BQ96KC2 179 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 PLB1Q6P1J6 1458 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 GSTA4O15217 222 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 FGFR3P22607 806 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 PRKAA2P54646 552 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 YWHAHQ04917 246 aaPredicted RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 IFIT5Q13325 482 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 ZNF354CQ86Y25 554 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 SLC4A11Q8NBS3 891 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 C19orf18Q8NEA5 215 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 MND1Q9BWT6 205 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 USP29Q9HBJ7 922 aa12.09□□□□□ -0.47
SNIP1-201ENST00000296215 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 MRPL11Q9Y3B7 192 aaKnown RBP12.09□□□□□ -0.47
SNIP1-201ENST00000296215 CYP26A1O43174 497 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 CRTAMO95727 393 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 PRG2P13727 222 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 BGNP21810 368 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 PRIM2P49643 509 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 ACTR3P61158 418 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 MAPRE2Q15555 327 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 TAF2Q6P1X5 1199 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 ZNF530Q6P9A1 599 aaPredicted RBP12.08□□□□□ -0.48
SNIP1-201ENST00000296215 SYDE1Q6ZW31 735 aaPredicted RBP12.08□□□□□ -0.48
SNIP1-201ENST00000296215 OTOP3Q7RTS5 596 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 ZNF410Q86VK4 478 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 RALGPS2Q86X27 583 aaPredicted RBP12.08□□□□□ -0.48
SNIP1-201ENST00000296215 PTCD2Q8WV60 388 aaKnown RBP12.08□□□□□ -0.48
SNIP1-201ENST00000296215 CIB1Q99828 191 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 COPS4Q9BT78 406 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 MAGEF1Q9HAY2 307 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 MID2Q9UJV3 735 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 HSPD1P10809 573 aaKnown RBP12.08□□□□□ -0.48
SNIP1-201ENST00000296215 ARHGDIAP52565 204 aa12.08□□□□□ -0.48
SNIP1-201ENST00000296215 KCNQ4P56696 695 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms