RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Slc17a6Q8BLE7 582 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Tyw3Q8BSA9 257 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Slc38a7Q8BWH0 463 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Svs3bQ8BZH8 265 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Stau2Q8CJ67 570 aaKnown RBP17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Rnf112Q96DY5 654 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Dtwd1Q9D8U7 304 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Abt1Q9QYL7 269 aaKnown RBP17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Capn7Q9R1S8 813 aa17.04■□□□□ 0.32
Shh-201ENSMUST00000002708 Zfp94E9Q6Y4 486 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Vmn2r39L7N2E5 861 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 ChkaO54804 453 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Vti1aO89116 217 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Alkbh5Q3TSG4 395 aaKnown RBP17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Abhd15Q5F2F2 459 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Grid2Q61625 1007 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Chsy1Q6ZQ11 800 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 RfflQ6ZQM0 377 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Znf365Q8BG89 408 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Kcns3Q8BQZ8 491 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Ccdc159Q8C963 411 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 MafaQ8CF90 359 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Tfb1mQ8JZM0 345 aaKnown RBP17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Q8R1Y2 203 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Actl7bQ9QY83 418 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Klhl41A2AUC9 606 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Smok3aC0HKC8 504 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Smok3bC0HKC9 504 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 EdnrbP48302 442 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Stmn2P55821 179 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Hsph1Q61699 858 aaKnown RBP17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Txndc8Q69AB2 127 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Rimbp2Q80U40 1072 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Usp6nlQ80XC3 819 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Spata20Q80YT5 790 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Phactr3Q8BYK5 558 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Kctd12bQ8C7J6 292 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Csde1Q91W50 798 aaKnown RBP17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 ChiaQ91XA9 473 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Atad3Q925I1 591 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Ssu72Q9CY97 194 aaKnown RBP17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 Vwa7Q9JHA8 891 aa17.03■□□□□ 0.32
Shh-201ENSMUST00000002708 PotegA5H0M4 473 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Krt90E9Q1Z0 538 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Zc3h12bG3X9I7 835 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Arf4P61750 180 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Spag6Q3V0U9 509 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Dusp16Q6PCP3 660 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Trnp1Q80ZI1 223 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Ireb2Q811J3 963 aaKnown RBP17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Lrrc24Q8BHA1 521 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Zcchc18Q8VD24 393 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Alg9Q8VDI9 611 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Mpp5Q9JLB2 675 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Copg2Q9QXK3 871 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Ripk3Q9QZL0 486 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Ror1Q9Z139 937 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Slc8a3S4R2P9 928 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Gimd1E9PW74 217 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 GsrP47791 500 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Gpsm3Q3U1Z5 159 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Trcg1Q58Y74 825 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Prkaa1Q5EG47 559 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 XiapQ60989 496 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Zfp943Q6NZP4 507 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Mtmr10Q7TPM9 771 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 ItpkcQ7TS72 678 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Wdr35Q8BND3 1181 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Sulf1Q8K007 870 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Mcrs1Q99L90 462 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 Eif4e3Q9DBB5 207 aa17.02■□□□□ 0.32
Shh-201ENSMUST00000002708 1700031M16RikA0A087WSH0 82 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Atp8b4A2ANX3 1194 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Icam1P13597 537 aaKnown RBP17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Kcna3P16390 528 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Gjb3P28231 270 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 YwhazP63101 245 aaKnown RBP17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Ccndbp1Q3TVC7 356 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Cand2Q6ZQ73 1235 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Dars2Q8BIP0 653 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Clip4Q8CI96 704 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 OscarQ8VBT3 265 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Caap1Q8VDY9 356 aa17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Pkp2Q9CQ73 795 aaKnown RBP17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Ppp1r12aQ9DBR7 1029 aaKnown RBP17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Atp13a1Q9EPE9 1200 aaKnown RBP17.02■□□□□ 0.31
Shh-201ENSMUST00000002708 Zfp990B1AVN5 605 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Ccdc8D3YZV8 685 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Plekha5E9Q6H8 1269 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Gm8909G3UXE9 396 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Kng1O08677 661 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 PdgfaP20033 211 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 NcstnP57716 708 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 S100a5P63084 93 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 RalgdsQ03385 852 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Arid5aQ3U108 590 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Cage1Q5IR70 849 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Adgre1Q61549 931 aa17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Celf6Q7TN33 460 aaKnown RBP17.01■□□□□ 0.31
Shh-201ENSMUST00000002708 Slc9a4Q8BUE1 797 aa17.01■□□□□ 0.31
Retrieved 100 of 22,080 RNA–protein pairs in 63.9 ms