RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NANOGP1Q8N7R0 232 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 C16orf52Q8NHV5 167 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 MAP4K1Q92918 833 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 STK31Q9BXU1 1019 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 CHST8Q9H2A9 424 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 C1orf112Q9NSG2 853 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 MGAT4CQ9UBM8 478 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 DKK4Q9UBT3 224 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 TPCN1Q9ULQ1 816 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 TRIM38O00635 465 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 DSCR3O14972 297 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 RGS10O43665 173 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 RASSF9O75901 435 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 BRAFP15056 766 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 GATMP50440 423 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 ARHGEF7Q14155 803 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 MINDY4Q4G0A6 757 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 PXDC1Q5TGL8 231 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 PIP4P1Q86T03 277 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 LIX1LQ8IVB5 337 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 TCEAL8Q8IYN2 117 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 MAGEB6Q8N7X4 407 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 MAFAQ8NHW3 353 aaPredicted RBP5.08□□□□□ -1.6
CD44-239ENST00000639002 KRTAP1-5Q9BYS1 174 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 DHX36Q9H2U1 1008 aaKnown RBP5.08□□□□□ -1.6
CD44-239ENST00000639002 MTMR4Q9NYA4 1195 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 RGS17Q9UGC6 210 aaPredicted RBP5.08□□□□□ -1.6
CD44-239ENST00000639002 AFF4Q9UHB7 1163 aaKnown RBP5.08□□□□□ -1.6
CD44-239ENST00000639002 RIMKLBQ9ULI2 386 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 PAXBP1Q9Y5B6 917 aa5.08□□□□□ -1.6
CD44-239ENST00000639002 TTC3P53804 2025 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 LY6G6EA0A0G2JKS1 128 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 EXOC5O00471 708 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 FGBP02675 491 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 PARP1P09874 1014 aaKnown RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 TXNP10599 105 aaKnown RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 MYF5P13349 255 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 PRF1P14222 555 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 ZKSCAN1P17029 563 aaPredicted RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 BTF3P20290 206 aaKnown RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 THBS4P35443 961 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 LINC00205P59089 165 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 FHL3Q13643 280 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 TRIM71Q2Q1W2 868 aaKnown RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 C10orf25Q5T742 122 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 NXNQ6DKJ4 435 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 USP49Q70CQ1 688 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 FAM156AQ8NDB6 213 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 OSR1Q8TAX0 266 aaPredicted RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 PIGOQ8TEQ8 1089 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 EDC3Q96F86 508 aaKnown RBP5.07□□□□□ -1.6
CD44-239ENST00000639002 HMCESQ96FZ2 354 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 SIGLEC11Q96RL6 698 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 WACQ9BTA9 647 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 TRIM36Q9NQ86 728 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 MID2Q9UJV3 735 aa5.07□□□□□ -1.6
CD44-239ENST00000639002 PIAS2O75928 621 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 NTSR1P30989 418 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 PGDP52209 483 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 CFHR3Q02985 330 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 RBMS2Q15434 407 aaKnown RBP5.06□□□□□ -1.6
CD44-239ENST00000639002 ZNF260Q3ZCT1 412 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 C4orf46Q504U0 113 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 ARHGAP29Q52LW3 1261 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 TMTC4Q5T4D3 741 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 RNF220Q5VTB9 566 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 TMEM65Q6PI78 240 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 SHC4Q6S5L8 630 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 RANBP10Q6VN20 620 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 DCDC5Q6ZRR9 648 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 C11orf44Q8N8P7 122 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 APIPQ96GX9 242 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 AS3MTQ9HBK9 375 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 TMEM184CQ9NVA4 438 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 VPS51Q9UID3 782 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 EID1Q9Y6B2 187 aa5.06□□□□□ -1.6
CD44-239ENST00000639002 RAB27BO00194 218 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 SOCS2O14508 198 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 MARCH6O60337 910 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 U2AF1L5P0DN76 240 aaPredicted RBP5.05□□□□□ -1.6
CD44-239ENST00000639002 PHKG2P15735 406 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 ACVR2AP27037 513 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 CPT1AP50416 773 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 CCT4P50991 539 aaKnown RBP5.05□□□□□ -1.6
CD44-239ENST00000639002 HTRA4P83105 476 aaPredicted RBP5.05□□□□□ -1.6
CD44-239ENST00000639002 U2AF1Q01081 240 aaKnown RBP eCLIP5.05□□□□□ -1.6
CD44-239ENST00000639002 GHRHRQ02643 423 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 CFHR1Q03591 330 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 FHL1Q13642 323 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 GALEQ14376 348 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 SLC29A2Q14542 456 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 KCNAB1Q14722 419 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 PPP2R5AQ15172 486 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 PLAG1Q6DJT9 500 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 CHST15Q7LFX5 561 aaPredicted RBP5.05□□□□□ -1.6
CD44-239ENST00000639002 LRTOMTQ8WZ04 291 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 VCPIP1Q96JH7 1222 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 SNX15Q9NRS6 342 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 HDAC9Q9UKV0 1011 aa5.05□□□□□ -1.6
CD44-239ENST00000639002 CAPN11Q9UMQ6 739 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms