RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 OVCA2Q8WZ82 227 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 ZNF516Q92618 1163 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 WBP2Q969T9 261 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 OTUB2Q96DC9 234 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 MED10Q9BTT4 135 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 TRIM9Q9C026 710 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 LRRC27Q9C0I9 530 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 TNMDQ9H2S6 317 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 SLC6A14Q9UN76 642 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 DMXL2Q8TDJ6 3036 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 TRIM24O15164 1050 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 HOXC11O43248 304 aaPredicted RBP20.58■□□□□ 0.89
CLN3-262ENST00000637699 GABRG2P18507 467 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 CDH8P55286 799 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 ASIC1P78348 528 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 GFPT1Q06210 699 aaPredicted RBP20.58■□□□□ 0.89
CLN3-262ENST00000637699 SEMA3BQ13214 749 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 DUOXA1Q1HG43 343 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 EPM2AIP1Q7L775 607 aaPredicted RBP20.58■□□□□ 0.89
CLN3-262ENST00000637699 TRMT11Q7Z4G4 463 aaKnown RBP20.58■□□□□ 0.89
CLN3-262ENST00000637699 PIP4P1Q86T03 277 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 NELFCDQ8IXH7 590 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 HDDC3Q8N4P3 179 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 XXYLT1Q8NBI6 393 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 ERLEC1Q96DZ1 483 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 SPHK2Q9NRA0 654 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 KBTBD4Q9NVX7 518 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 CALCOCO1Q9P1Z2 691 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 KLK13Q9UKR3 277 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 NEUROG3Q9Y4Z2 214 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 BAHCC1Q9P281 2608 aa20.58■□□□□ 0.89
CLN3-262ENST00000637699 ADAMTS9Q9P2N4 1935 aa20.58■□□□□ 0.88
CLN3-262ENST00000637699 ATP8B3O60423 1300 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 PLXND1Q9Y4D7 1925 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 PHACTR2O75167 634 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 CLSTN1O94985 981 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 HOXB3P14651 431 aaPredicted RBP20.57■□□□□ 0.88
CLN3-262ENST00000637699 HOXB2P14652 356 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 SLC5A3P53794 718 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 PREPLQ4J6C6 727 aaPredicted RBP20.57■□□□□ 0.88
CLN3-262ENST00000637699 FAM26FQ5R3K3 315 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 PEAR1Q5VY43 1037 aaPredicted RBP20.57■□□□□ 0.88
CLN3-262ENST00000637699 SLC36A4Q6YBV0 504 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 NUDT18Q6ZVK8 323 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 FAM35AQ86V20 835 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 MIB1Q86YT6 1006 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 TERB1Q8NA31 727 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 CEP76Q8TAP6 659 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 KCNV2Q8TDN2 545 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 SYAP1Q96A49 352 aaPredicted RBP20.57■□□□□ 0.88
CLN3-262ENST00000637699 NACA2Q9H009 215 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 GZF1Q9H116 711 aaPredicted RBP20.57■□□□□ 0.88
CLN3-262ENST00000637699 XYLT2Q9H1B5 865 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 SMYD3Q9H7B4 428 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 GMIPQ9P107 970 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 HCN2Q9UL51 889 aa20.57■□□□□ 0.88
CLN3-262ENST00000637699 MORC2Q9Y6X9 1032 aaPredicted RBP20.57■□□□□ 0.88
CLN3-262ENST00000637699 PKD1L2Q7Z442 2459 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 STAU1O95793 577 aaKnown RBP20.56■□□□□ 0.88
CLN3-262ENST00000637699 SERPINF2P08697 491 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 NTSR1P30989 418 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 ATICP31939 592 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 HOXD12P35452 270 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 ZNF33AQ06730 810 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 COL9A2Q14055 689 aaPredicted RBP20.56■□□□□ 0.88
CLN3-262ENST00000637699 E2F4Q16254 413 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 SNX30Q5VWJ9 437 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 PAQR9Q6ZVX9 377 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 OR2I1PQ8NGU4 316 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 ELMO3Q96BJ8 720 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 DHX58Q96C10 678 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 DMAP1Q9NPF5 467 aaPredicted RBP20.56■□□□□ 0.88
CLN3-262ENST00000637699 DSPP15924 2871 aaKnown RBP20.56■□□□□ 0.88
CLN3-262ENST00000637699 CEP192Q8TEP8 1941 aa20.56■□□□□ 0.88
CLN3-262ENST00000637699 UPK3BL1B0FP48 263 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 UPK3BL2E5RIL1 263 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 ZBTB24O43167 697 aaPredicted RBP20.55■□□□□ 0.88
CLN3-262ENST00000637699 OPHN1O60890 802 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 CASP4P49662 377 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 FAM193AP78312 1265 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 AMPD3Q01432 767 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 STK38Q15208 465 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 EGFLAMQ63HQ2 1017 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 GRAMD4Q6IC98 578 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 SCARA5Q6ZMJ2 495 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 MINDY1Q8N5J2 469 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 SCFD1Q8WVM8 642 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 ACOX2Q99424 681 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 CAPN10Q9HC96 672 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 DNAJC17Q9NVM6 304 aaKnown RBP20.55■□□□□ 0.88
CLN3-262ENST00000637699 IL37Q9NZH6 218 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 MTMR6Q9Y217 621 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 MSRB2Q9Y3D2 182 aa20.55■□□□□ 0.88
CLN3-262ENST00000637699 IGHV1OR15-9A0A0B4J2B8 117 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 A0A1W2PQF6 199 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 AP1G2O75843 785 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 ZDHHC11BP0C7U3 371 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 PGFP49763 221 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 TUBP50607 506 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 BIRC3Q13489 604 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 183 ms