RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, human

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-244	ENST00000636147	APOBEC3H	Q6NTF7	200 aa	Known RBP	11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	HHIPL2	Q6UWX4	724 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	ENDOV	Q8N8Q3	282 aa	Known RBP	11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	IL31RA	Q8NI17	732 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	NAT14	Q8WUY8	206 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	CPT1B	Q92523	772 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	CD101	Q93033	1021 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	SGF29	Q96ES7	293 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	BORCS6	Q96GS4	357 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	CATSPER2	Q96P56	530 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	CDRT15	Q96T59	188 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	EBF4	Q9BQW3	602 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	UNK	Q9C0B0	810 aa	Known RBP	11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	SLC38A10	Q9HBR0	1119 aa		11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	WARS2	Q9UGM6	360 aa	Known RBP	11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	TRPC5	Q9UL62	973 aa	Predicted RBP	11.44	□□□□□ -0.58
CLN3-244	ENST00000636147	hCG_1818297	A0A087WSY0	165 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	CRCP	O75575	148 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	TCEA3	O75764	348 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	RARB	P10826	455 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	IVD	P26440	423 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	RAP1GAP	P47736	663 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	GDF10	P55107	478 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	POTEA	Q6S8J7	498 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	B3GNT6	Q6ZMB0	384 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ARPIN	Q7Z6K5	226 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	UPF3A	Q9H1J1	476 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	SEMA6A	Q9H2E6	1030 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	THAP1	Q9NVV9	213 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	SNX13	Q9Y5W8	968 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	KPNA7	A9QM74	516 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	RALB	P11234	206 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	PSMC3	P17980	439 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	FGFR3	P22607	806 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	CCND2	P30279	289 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ALDH1A3	P47895	512 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ZNF568	Q3ZCX4	644 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	VWA5B1	Q5TIE3	1220 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	PODN	Q7Z5L7	613 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	SULF1	Q8IWU6	871 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	PIWIL2	Q8TC59	973 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	GMCL1	Q96IK5	515 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	FAM96A	Q9H5X1	160 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	NRBP2	Q9NSY0	501 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	RNF146	Q9NTX7	359 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	AKAP10	O43572	662 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ECE2	O60344	883 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	UQCRB	P14927	111 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	GLRB	P48167	497 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	MAPK10	P53779	464 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ACTR2	P61160	394 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	PID1	Q7Z2X4	250 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	ANKS1B	Q7Z6G8	1248 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	HACE1	Q8IYU2	909 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	AFAP1L2	Q8N4X5	818 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	EXT2	Q93063	718 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	LENG1	Q96BZ8	264 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	TIPIN	Q9BVW5	301 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	RNPEP	Q9H4A4	650 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	USP18	Q9UMW8	372 aa		11.43	□□□□□ -0.58
CLN3-244	ENST00000636147	TCRBV7S3A2	A0A539	114 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	STRN	O43815	780 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	MTA2	O94776	668 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	GYS1	P13807	737 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	SERPINB8	P50452	374 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	CDH8	P55286	799 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	GTF2B	Q00403	316 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	MSS51	Q4VC12	460 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	TSHZ1	Q6ZSZ6	1077 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	LPCAT2	Q7L5N7	544 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	IFNE	Q86WN2	208 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	ZNF786	Q8N393	782 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	TMEM161B	Q8NDZ6	487 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	NRG4	Q8WWG1	115 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	NIF3L1	Q9GZT8	377 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	IL1RL2	Q9HB29	575 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	S100A14	Q9HCY8	104 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	FAM49B	Q9NUQ9	324 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	LNPEP	Q9UIQ6	1025 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	FEM1B	Q9UK73	627 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	KIF1A	Q12756	1690 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	GAK	O14976	1311 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	CSPG5	O95196	566 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	MT-CO1	P00395	513 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	FAM58BP	P0C7Q3	252 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	RBL1	P28749	1068 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	RPL5	P46777	297 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	SERPINB9	P50453	376 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	MRPS9	P82933	396 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	TBCC	Q15814	346 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	UGCG	Q16739	394 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	SPDYA	Q5MJ70	313 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	SNX32	Q86XE0	403 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	BANP	Q8N9N5	519 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	LMO3	Q8TAP4	145 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	DIS3L	Q8TF46	1054 aa	Known RBP	11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms