RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 PIK3R2O00459 728 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 TEX28O15482 410 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 CXCL14O95715 111 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 ATP1A1P05023 1023 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 GLI1P08151 1106 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 LCP1P13796 627 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 NDUFV1P49821 464 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 TKTL1P51854 596 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 MRPS5P82675 430 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 ADIGQ0VDE8 80 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 EFHC1Q5JVL4 640 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 FAM102AQ5T9C2 384 aaPredicted RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 DCUN1D2Q6PH85 259 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 CHRDL2Q6WN34 429 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 GPRIN1Q7Z2K8 1008 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 DAAM2Q86T65 1068 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 SRLQ86TD4 932 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 AUTS2Q8WXX7 1259 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 PIWIL1Q96J94 861 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 SPATA17Q96L03 361 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 PBX4Q9BYU1 374 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 ALG13Q9NP73 1137 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 IP6K2Q9UHH9 426 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 FEZ2Q9UHY8 353 aaPredicted RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 HPCAL4Q9UM19 191 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 ALG6Q9Y672 507 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 GBF1Q92538 1859 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 SART1O43290 800 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 OPA1O60313 960 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 PROSCO94903 275 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 GJB6O95452 261 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 CNPP09543 421 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 TNFRSF8P28908 595 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 TUFMP49411 452 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 ERVFC1P60507 584 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 DUSP4Q13115 394 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 RAB30Q15771 203 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 MEI1Q5TIA1 1274 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 TMC7Q7Z402 723 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 SPRED2Q7Z698 418 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 NT5DC3Q86UY8 548 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 SIX6OS1Q8N1H7 587 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 NIPA2Q8N8Q9 360 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 MRPL43Q8N983 215 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 JOSD2Q8TAC2 188 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 POF1BQ8WVV4 589 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 IRGQQ8WZA9 623 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 MCEEQ96PE7 176 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 METTL5Q9NRN9 209 aaKnown RBP14.82□□□□□ -0.04
CLN3-242ENST00000635958 SNX12Q9UMY4 172 aa14.82□□□□□ -0.04
CLN3-242ENST00000635958 PATJQ8NI35 1801 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 C2CD4BA6NLJ0 364 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 GOLGA8KD6RF30 607 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 FSCN2O14926 492 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 ZBED1O96006 694 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 C1RP00736 705 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 DNAJB1P25685 340 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 DNAJB2P25686 324 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 MAN1A1P33908 653 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 PBX2P40425 430 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 SLC1A1P43005 524 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 PAFAH1B1P43034 410 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 DAOAP59103 153 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 RPL10AP62906 217 aaKnown RBP14.81□□□□□ -0.04
CLN3-242ENST00000635958 NNTQ13423 1086 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 CAMK1Q14012 370 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 MESDQ14696 234 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 DDR2Q16832 855 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 ALS2CLQ60I27 953 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 SCN4BQ8IWT1 228 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 TTC9BQ8N6N2 239 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 BTBD6Q96KE9 485 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 TCF25Q9BQ70 676 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 ULBP1Q9BZM6 244 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 NGRNQ9NPE2 291 aaKnown RBP14.81□□□□□ -0.04
CLN3-242ENST00000635958 TLR9Q9NR96 1032 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 COMMD8Q9NX08 183 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 MSRAQ9UJ68 235 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 SLC27A5Q9Y2P5 690 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 HYOU1Q9Y4L1 999 aa14.81□□□□□ -0.04
CLN3-242ENST00000635958 FAM92AA1XBS5 289 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 H3BNC9 293 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 TNNT3P45378 269 aaPredicted RBP14.8□□□□□ -0.04
CLN3-242ENST00000635958 SLC5A3P53794 718 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 OGDHQ02218 1023 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 ZNF252P-AS1Q0IIN9 211 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 PIGHQ14442 188 aaPredicted RBP14.8□□□□□ -0.04
CLN3-242ENST00000635958 ACAP1Q15027 740 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 TAF5Q15542 800 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 PDE12Q6L8Q7 609 aaKnown RBP14.8□□□□□ -0.04
CLN3-242ENST00000635958 LILRA6Q6PI73 481 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 BHLHA9Q7RTU4 235 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 TCEAL8Q8IYN2 117 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 TDHQ8IZJ6 230 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 NUP93Q8N1F7 819 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 CLEC4CQ8WTT0 213 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 KLHL5Q96PQ7 755 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 TLR10Q9BXR5 811 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 PRO3102Q9H379 93 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 GOLPH3Q9H4A6 298 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms