RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MEA1Q16626 185 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 PKDCCQ504Y2 493 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 TAF3Q5VWG9 929 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 MON1AQ86VX9 555 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 PASD1Q8IV76 773 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 ARID3BQ8IVW6 561 aaPredicted RBP19.03■□□□□ 0.64
CLN3-239ENST00000628023 CMTM8Q8IZV2 173 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 SLC46A2Q9BY10 475 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 XPO4Q9C0E2 1151 aaKnown RBP19.03■□□□□ 0.64
CLN3-239ENST00000628023 NACA2Q9H009 215 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 IL37Q9NZH6 218 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 CHORDC1Q9UHD1 332 aaPredicted RBP19.03■□□□□ 0.64
CLN3-239ENST00000628023 SCML2Q9UQR0 700 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 ZNF638Q14966 1978 aaKnown RBP19.02■□□□□ 0.64
CLN3-239ENST00000628023 NCANO14594 1321 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 FAM186AA6NE01 2351 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 FAM92AA1XBS5 289 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 C2orf78A6NCI8 922 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 USP17L7P0C7H9 530 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 ARID5AQ03989 594 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 PMF1Q6P1K2 205 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 POTEHQ6S545 545 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 TTC16Q8NEE8 873 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 NOX5Q96PH1 765 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 RPP25Q9BUL9 199 aaKnown RBP19.02■□□□□ 0.64
CLN3-239ENST00000628023 ULBP1Q9BZM6 244 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 SEMA4AQ9H3S1 761 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 OBSL1O75147 1896 aa19.02■□□□□ 0.64
CLN3-239ENST00000628023 SOBPA7XYQ1 873 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 PIK3R2O00459 728 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 ECI2O75521 394 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 ZBED1O96006 694 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 DCNP07585 359 aaKnown RBP19.01■□□□□ 0.63
CLN3-239ENST00000628023 HDCP19113 662 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 VIPR2P41587 438 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 STARD6P59095 220 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 PRKCQQ04759 706 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 RAB41Q5JT25 222 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 HECTD3Q5T447 861 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 TANGO2Q6ICL3 276 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 CCDC186Q7Z3E2 898 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 FMNL3Q8IVF7 1028 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 ARHGAP18Q8N392 663 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 ARL14EPQ8N8R7 260 aaPredicted RBP19.01■□□□□ 0.63
CLN3-239ENST00000628023 EPS8L1Q8TE68 723 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 SLC35F5Q8WV83 523 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 KCTD13Q8WZ19 329 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 E2F7Q96AV8 911 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 ELSPBP1Q96BH3 223 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 HSFY1Q96LI6 401 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 NUP58Q9BVL2 599 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 SMG9Q9H0W8 520 aaKnown RBP19.01■□□□□ 0.63
CLN3-239ENST00000628023 NAGPAQ9UK23 515 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 PCDHGC3Q9UN70 934 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 USP3Q9Y6I4 520 aa19.01■□□□□ 0.63
CLN3-239ENST00000628023 A0A1W2PQH9 124 aa19■□□□□ 0.63
CLN3-239ENST00000628023 PRAMEF12O95522 483 aa19■□□□□ 0.63
CLN3-239ENST00000628023 CCDC172P0C7W6 258 aa19■□□□□ 0.63
CLN3-239ENST00000628023 PFKLP17858 780 aa19■□□□□ 0.63
CLN3-239ENST00000628023 FCARP24071 287 aa19■□□□□ 0.63
CLN3-239ENST00000628023 GPD2P43304 727 aa19■□□□□ 0.63
CLN3-239ENST00000628023 PDCLQ13371 301 aa19■□□□□ 0.63
CLN3-239ENST00000628023 SLC44A4Q53GD3 710 aa19■□□□□ 0.63
CLN3-239ENST00000628023 ZC3H14Q6PJT7 736 aaKnown RBP19■□□□□ 0.63
CLN3-239ENST00000628023 NOP9Q86U38 636 aaKnown RBP19■□□□□ 0.63
CLN3-239ENST00000628023 C1orf131Q8NDD1 294 aaKnown RBP19■□□□□ 0.63
CLN3-239ENST00000628023 PJA1Q8NG27 643 aa19■□□□□ 0.63
CLN3-239ENST00000628023 RBSNQ9H1K0 784 aa19■□□□□ 0.63
CLN3-239ENST00000628023 SYNCQ9H7C4 482 aa19■□□□□ 0.63
CLN3-239ENST00000628023 KIF9Q9HAQ2 790 aa19■□□□□ 0.63
CLN3-239ENST00000628023 TRPV4Q9HBA0 871 aa19■□□□□ 0.63
CLN3-239ENST00000628023 CNGB3Q9NQW8 809 aa19■□□□□ 0.63
CLN3-239ENST00000628023 DENND4CQ5VZ89 1909 aa19■□□□□ 0.63
CLN3-239ENST00000628023 KANSL1LA0AUZ9 987 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 HEPACAM2A8MVW5 462 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 MBL2P11226 248 aaPredicted RBP18.99■□□□□ 0.63
CLN3-239ENST00000628023 RALAP11233 206 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 FERP16591 822 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 PBX1P40424 430 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 ACADSBP45954 432 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 PSEN1P49768 467 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 TUBP50607 506 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 GRM2Q14416 872 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 MLF2Q15773 248 aaPredicted RBP18.99■□□□□ 0.63
CLN3-239ENST00000628023 TADA2BQ86TJ2 420 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 ZNF677Q86XU0 584 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 C1orf210Q8IVY1 113 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 YAF2Q8IY57 180 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 CELF5Q8N6W0 485 aaKnown RBP18.99■□□□□ 0.63
CLN3-239ENST00000628023 TMEM35BQ8NCS4 154 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 IPO4Q8TEX9 1081 aaKnown RBP18.99■□□□□ 0.63
CLN3-239ENST00000628023 GOLGA1Q92805 767 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 SLC22A12Q96S37 553 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 CYP2S1Q96SQ9 504 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 MIS12Q9H081 205 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 LHX5Q9H2C1 402 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 MYO6Q9UM54 1294 aa18.99■□□□□ 0.63
CLN3-239ENST00000628023 NUP210Q8TEM1 1887 aaPredicted RBP18.99■□□□□ 0.63
CLN3-239ENST00000628023 LRRC53A6NM62 1247 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 TLR5O60602 858 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms