RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CRY1Q16526 586 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 C2orf27AQ580R0 203 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 SPDYCQ5MJ68 293 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 RHBDF2Q6PJF5 856 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 SCARA5Q6ZMJ2 495 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 TADA2BQ86TJ2 420 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 ACOT1Q86TX2 421 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 GRAMD1CQ8IYS0 662 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 GUF1Q8N442 669 aaKnown RBP12.61□□□□□ -0.39
UPF3B-204ENST00000619445 PLEKHO2Q8TD55 490 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 EZH1Q92800 747 aaPredicted RBP12.61□□□□□ -0.39
UPF3B-204ENST00000619445 SPACA7Q96KW9 195 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 CDK5RAP1Q96SZ6 601 aaKnown RBP12.61□□□□□ -0.39
UPF3B-204ENST00000619445 KCNK16Q96T55 309 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 DUSP15Q9H1R2 295 aaPredicted RBP12.61□□□□□ -0.39
UPF3B-204ENST00000619445 ARHGEF4Q9NR80 690 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 TMEM30AQ9NV96 361 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 PCDHA5Q9Y5H7 936 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 ABCA7Q8IZY2 2146 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 THADAQ6YHU6 1953 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 A0A1W2PQ27 194 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 A0A1W2PQ64 194 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 A0A1W2PQD8 194 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 BCLAF3A2AJT9 711 aaKnown RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 ZBTB24O43167 697 aaPredicted RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 STX10O60499 249 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 TLR5O60602 858 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 NR2F2P24468 414 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 GTF2H1P32780 548 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 NDST1P52848 882 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 E2F5Q15329 346 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 GAB4Q2WGN9 574 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 NAIF1Q69YI7 327 aaPredicted RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 KLHDC10Q6PID8 442 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 PAQR9Q6ZVX9 377 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 SCAMP5Q8TAC9 235 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 SLC2A14Q8TDB8 520 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 WHAMMQ8TF30 809 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 HNRNPABQ99729 332 aaKnown RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 NT5C1AQ9BXI3 368 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 GTPBP4Q9BZE4 634 aaKnown RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.6□□□□□ -0.393e-19■■■■■ 242.2
UPF3B-204ENST00000619445 DEC1Q9P2X7 70 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 CHORDC1Q9UHD1 332 aaPredicted RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 LSM7Q9UK45 103 aaKnown RBP12.6□□□□□ -0.39
UPF3B-204ENST00000619445 SCML2Q9UQR0 700 aa12.6□□□□□ -0.39
UPF3B-204ENST00000619445 CEP295Q9C0D2 2601 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 GDF9O60383 454 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 CAVIN2O95810 425 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 HLA-DRAP01903 254 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 PSMC2P35998 433 aaKnown RBP12.59□□□□□ -0.39
UPF3B-204ENST00000619445 ATP5C1P36542 298 aaKnown RBP12.59□□□□□ -0.39
UPF3B-204ENST00000619445 ASPAP45381 313 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 SEC13P55735 322 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 CREB5Q02930 508 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 PKP1Q13835 747 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 SF3A2Q15428 464 aaKnown RBP12.59□□□□□ -0.39
UPF3B-204ENST00000619445 LY6G5CQ5SRR4 150 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 STPG1Q5TH74 334 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 PMS2CLQ68D20 193 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 ANO7Q6IWH7 933 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 HTR3DQ70Z44 454 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 FAM186BQ8IYM0 893 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 ZNF276Q8N554 614 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 ZFRQ96KR1 1074 aaKnown RBP12.59□□□□□ -0.39
UPF3B-204ENST00000619445 XPO6Q96QU8 1125 aaKnown RBP12.59□□□□□ -0.39
UPF3B-204ENST00000619445 NIF3L1Q9GZT8 377 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 CYLDQ9NQC7 956 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 SPHK2Q9NRA0 654 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 GMIPQ9P107 970 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 WDR35Q9P2L0 1181 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 PLXND1Q9Y4D7 1925 aa12.59□□□□□ -0.39
UPF3B-204ENST00000619445 TBC1D3BA6NDS4 549 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 HOXD12P35452 270 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 MAP3K7CLP57077 242 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 SLC8A3P57103 927 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 DLG4P78352 724 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 DPYDQ12882 1025 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 EDRF1Q3B7T1 1238 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 DAB2IPQ5VWQ8 1189 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 RNF43Q68DV7 783 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 LPCAT2Q7L5N7 544 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 CYP2U1Q7Z449 544 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 ETFBKMTQ8IXQ9 262 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 IL17RCQ8NAC3 791 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 OLIG1Q8TAK6 271 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 SMOQ99835 787 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 SDCBP2Q9H190 292 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 CCSER2Q9H7U1 834 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 TMEM8AQ9HCN3 771 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 RMND1Q9NWS8 449 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 BCCIPQ9P287 314 aaKnown RBP eCLIP12.58□□□□□ -0.4
UPF3B-204ENST00000619445 ZNF510Q9Y2H8 683 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 GON4LQ3T8J9 2241 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 PI4KAP42356 2102 aa12.58□□□□□ -0.4
UPF3B-204ENST00000619445 MAP1BP46821 2468 aaKnown RBP12.58□□□□□ -0.4
UPF3B-204ENST00000619445 TM4SF5O14894 197 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 KHNYNO15037 678 aaKnown RBP12.57□□□□□ -0.4
UPF3B-204ENST00000619445 MAP3K13O43283 966 aa12.57□□□□□ -0.4
UPF3B-204ENST00000619445 TULP3O75386 442 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms