RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SAPCD2Q86UD0 394 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 NLRX1Q86UT6 975 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ERI1Q8IV48 349 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 PDIK1LQ8N165 341 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ACTRT2Q8TDY3 377 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SNRNP27Q8WVK2 155 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 E2F7Q96AV8 911 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ACCSQ96QU6 501 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SLX1AQ9BQ83 275 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 GRIP2Q9C0E4 1043 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ELP3Q9H9T3 547 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ITGA11Q9UKX5 1188 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SNCAIPQ9Y6H5 919 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CD48P09326 243 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ACAT1P24752 427 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 PTPN7P35236 360 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 TAS2R40P59535 323 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 MCCD1P59942 119 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 CREB5Q02930 508 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 TMEM62Q0P6H9 643 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 BST1Q10588 318 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 TLR1Q15399 786 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 OASLQ15646 514 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 CNGA3Q16281 694 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ABCB5Q2M3G0 1257 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 MYLK3Q32MK0 819 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 RABGAP1LQ5R372 815 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 LRRC8BQ6P9F7 803 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 RNF111Q6ZNA4 994 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 PATL1Q86TB9 770 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 RHPN2Q8IUC4 686 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 METTL25Q8N6Q8 603 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 TTC13Q8NBP0 860 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 FBXO36Q8NEA4 188 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 HELQQ8TDG4 1101 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SLC10A4Q96EP9 437 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 BIRC8Q96P09 236 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SRPK1Q96SB4 655 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 HAUS8Q9BT25 410 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 MRPL1Q9BYD6 325 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SENP6Q9GZR1 1112 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 CREBZFQ9NS37 354 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 HSPBP1Q9NZL4 362 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ZNHIT2Q9UHR6 403 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 COQ4Q9Y3A0 265 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 NR2E3Q9Y5X4 410 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SF3B1O75533 1304 aaKnown RBP eCLIP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SH3PXD2BA1X283 911 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 E5RJQ4 531 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SGK1O00141 431 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 GH2P01242 217 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 OATP04181 439 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 AKR1B1P15121 316 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF76P36508 570 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 CAP2P40123 477 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 MLH1P40692 756 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ECE1P42892 770 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ALDH1A3P47895 512 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF157P51786 506 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 HTRA3P83110 453 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 LRRC38Q5VT99 294 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 TATDN1Q6P1N9 297 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 USP37Q86T82 979 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF410Q86VK4 478 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SLC44A1Q8WWI5 657 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 PRPF31Q8WWY3 499 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SLC35B4Q969S0 331 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 DCUN1D1Q96GG9 259 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 VPS50Q96JG6 964 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 VCPIP1Q96JH7 1222 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SERAC1Q96JX3 654 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 GCNAQ96QF7 691 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 FRMD8P1Q9BZ68 369 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 PCIF1Q9H4Z3 704 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 FAM96AQ9H5X1 160 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SMYD3Q9H7B4 428 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 PLGRKTQ9HBL7 147 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 ARHGEF38Q9NXL2 777 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 SIRPGQ9P1W8 387 aa11.24□□□□□ -0.61
UPF3A-212ENST00000619079 HBS1LQ9Y450 684 aaKnown RBP11.24□□□□□ -0.61
UPF3A-212ENST00000619079 PCNTO95613 3336 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 STK10O94804 968 aaKnown RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 ASNSP08243 561 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 CYP3A4P08684 503 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 KRT5P13647 590 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 ATF7P17544 494 aaPredicted RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 CDH2P19022 906 aaPredicted RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SLC5A2P31639 672 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 HDAC4P56524 1084 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 APOFQ13790 326 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 PDCD4Q53EL6 469 aaKnown RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 LGSNQ5TDP6 509 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 GRAMD4Q6IC98 578 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 DHRS4L2Q6PKH6 230 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 PACS1Q6VY07 963 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 TRIM72Q6ZMU5 477 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SH2D5Q6ZV89 423 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 CLEC10AQ8IUN9 316 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 PLEKHO2Q8TD55 490 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms