RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ELSPBP1Q96BH3 223 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 SLITRK1Q96PX8 696 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 GCNAQ96QF7 691 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 TTYH3Q9C0H2 523 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 LINC00597Q9H2U6 94 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 HEBP1Q9NRV9 189 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 TDP1Q9NUW8 608 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 IGSF9Q9P2J2 1179 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 UXTQ9UBK9 157 aaPredicted RBP14.2□□□□□ -0.14
LINC00540-202ENST00000616974 HESX1Q9UBX0 185 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 NOCTQ9UK39 431 aaKnown RBP14.2□□□□□ -0.14
LINC00540-202ENST00000616974 DUSP12Q9UNI6 340 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 SCML2Q9UQR0 700 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 CPQQ9Y646 472 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 E5RJQ4 531 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 RTN3O95197 1032 aaPredicted RBP14.19□□□□□ -0.14
LINC00540-202ENST00000616974 OLFM2O95897 454 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 GDI1P31150 447 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 ARHGAP15Q53QZ3 475 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 NEK11Q8NG66 645 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 EDAQ92838 391 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 FAM124BQ9H5Z6 455 aaPredicted RBP14.19□□□□□ -0.14
LINC00540-202ENST00000616974 TRPV4Q9HBA0 871 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 NAGPAQ9UK23 515 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 WNT6Q9Y6F9 365 aa14.19□□□□□ -0.14
LINC00540-202ENST00000616974 GOLGA6L19H0YKK7 550 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 TLR5O60602 858 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 ECI2O75521 394 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 FYNP06241 537 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 ARSAP15289 507 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 UBASH3AP57075 661 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PITX1P78337 314 aaPredicted RBP14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PHLDB2Q86SQ0 1253 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 SH3RF2Q8TEC5 729 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PCDHB18PQ96TA0 734 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PNPLA8Q9NP80 782 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 KMT2EQ8IZD2 1858 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PAPSS1O43252 624 aaPredicted RBP14.18□□□□□ -0.14
LINC00540-202ENST00000616974 ZBED1O96006 694 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 TPM2P07951 284 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 IRF1P10914 325 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PSMC3P17980 439 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 SOX5P35711 763 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PDCLQ13371 301 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 ZNF77Q15935 545 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 PTPN20Q4JDL3 420 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 TRIM67Q6ZTA4 783 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 CCDC186Q7Z3E2 898 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 MFSD6LQ8IWD5 586 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 SIX5Q8N196 739 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 EBF3Q9H4W6 596 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.18□□□□□ -0.14
LINC00540-202ENST00000616974 KIAA1257Q9ULG3 409 aa14.18□□□□□ -0.14
LINC00540-202ENST00000616974 ZFP37Q9Y6Q3 630 aaPredicted RBP14.18□□□□□ -0.14
LINC00540-202ENST00000616974 LRRC53A6NM62 1247 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 GRAP2O75791 330 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 ERBB2P04626 1255 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 SRFP11831 508 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 RARGP13631 454 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 DAOAP59103 153 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 FMO1Q01740 532 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 FCHO2Q0JRZ9 810 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 MESP2Q0VG99 397 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 PM20D1Q6GTS8 502 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 TXNDC11Q6PKC3 985 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 MTSS1LQ765P7 747 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 MIB1Q86YT6 1006 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 CPA5Q8WXQ8 436 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 ADAM33Q9BZ11 813 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 LRRC4Q9HBW1 653 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 HPS4Q9NQG7 708 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 MTF2Q9Y483 593 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-202ENST00000616974 ZFHX2Q9C0A1 2572 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-202ENST00000616974 TRAV19A0A0A6YYK7 116 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 LEFTY2O00292 366 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 MSI1O43347 362 aaKnown RBP14.17□□□□□ -0.14
LINC00540-202ENST00000616974 PI15O43692 258 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 GREM1O60565 184 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 GJB6O95452 261 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 SETSIPP0DME0 302 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 MBL2P11226 248 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-202ENST00000616974 PTK2Q05397 1052 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 SNX30Q5VWJ9 437 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 ADAM32Q8TC27 787 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 CPLX3Q8WVH0 158 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 CEP295NLQ96MC4 621 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 SPAG5Q96R06 1193 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 FOXQ1Q9C009 403 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 FBXO44Q9H4M3 255 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 SFMBT1Q9UHJ3 866 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 RAPGEFL1Q9UHV5 662 aa14.17□□□□□ -0.14
LINC00540-202ENST00000616974 RIF1Q5UIP0 2472 aaKnown RBP14.17□□□□□ -0.14
LINC00540-202ENST00000616974 GPR179Q6PRD1 2367 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 HMBSP08397 361 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 TRIM21P19474 475 aaKnown RBP14.16□□□□□ -0.14
LINC00540-202ENST00000616974 RPL34P49207 117 aaKnown RBP14.16□□□□□ -0.14
LINC00540-202ENST00000616974 YWHAGP61981 247 aaKnown RBP eCLIP14.16□□□□□ -0.14
LINC00540-202ENST00000616974 PLCB2Q00722 1185 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 EFEMP1Q12805 493 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 HECTD3Q5T447 861 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms