RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PMS2CLQ68D20 193 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 TCEAL6Q6IPX3 200 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 ANO7Q6IWH7 933 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 PAQR9Q6ZVX9 377 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 TCEAL3Q969E4 200 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 SMARCD1Q96GM5 515 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 TNIP3Q96KP6 325 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 ZFRQ96KR1 1074 aaKnown RBP20.08■□□□□ 0.81
CDX1-202ENST00000616154 TPSD1Q9BZJ3 242 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 DMAP1Q9NPF5 467 aaPredicted RBP20.08■□□□□ 0.81
CDX1-202ENST00000616154 IL37Q9NZH6 218 aa20.08■□□□□ 0.81
CDX1-202ENST00000616154 A0A0A0MRY4 1105 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 COCHO43405 550 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 KAT7O95251 611 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 CAVIN2O95810 425 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 APODP05090 189 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 ADH5P11766 374 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 NR2F2P24468 414 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 GBP1P32455 592 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 TUBP50607 506 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 PNOCQ13519 176 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 HSF5Q4G112 596 aaPredicted RBP20.07■□□□□ 0.8
CDX1-202ENST00000616154 HECTD3Q5T447 861 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 RNF43Q68DV7 783 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 C12orf40Q86WS4 652 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 CCDC33Q8N5R6 958 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 MDGA1Q8NFP4 955 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 OTUB2Q96DC9 234 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 DUSP9Q99956 384 aaKnown RBP20.07■□□□□ 0.8
CDX1-202ENST00000616154 MED10Q9BTT4 135 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 LSM14BQ9BX40 385 aaKnown RBP20.07■□□□□ 0.8
CDX1-202ENST00000616154 SDCBP2Q9H190 292 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 RMND1Q9NWS8 449 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 COMMD8Q9NX08 183 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 FRMD4BQ9Y2L6 1034 aa20.07■□□□□ 0.8
CDX1-202ENST00000616154 TNRC6BQ9UPQ9 1833 aaKnown RBP20.07■□□□□ 0.8
CDX1-202ENST00000616154 USP24Q9UPU5 2620 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 FAM92AA1XBS5 289 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.06■□□□□ 0.8
CDX1-202ENST00000616154 CLSTN1O94985 981 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 VNN1O95497 513 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 ZDHHC11BP0C7U3 371 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 SLC5A3P53794 718 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 DLG4P78352 724 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 MESP2Q0VG99 397 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 SCARA5Q6ZMJ2 495 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 INTS8Q75QN2 995 aaKnown RBP20.06■□□□□ 0.8
CDX1-202ENST00000616154 SFTPA1Q8IWL2 248 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 FUKQ8N0W3 1084 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 ALLCQ8N6M5 410 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 SCAMP5Q8TAC9 235 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 GTPBP4Q9BZE4 634 aaKnown RBP20.06■□□□□ 0.8
CDX1-202ENST00000616154 ARHGEF4Q9NR80 690 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 INVSQ9Y283 1065 aa20.06■□□□□ 0.8
CDX1-202ENST00000616154 ALDH1A2O94788 518 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 HNRNPLP14866 589 aaKnown RBP eCLIP20.05■□□□□ 0.8
CDX1-202ENST00000616154 RPL13P26373 211 aaKnown RBP20.05■□□□□ 0.8
CDX1-202ENST00000616154 PMLP29590 882 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 GRIA2P42262 883 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 NFKBIBQ15653 356 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 LY6G5CQ5SRR4 150 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 N4BP2L1Q5TBK1 243 aaPredicted RBP20.05■□□□□ 0.8
CDX1-202ENST00000616154 ZNF658Q5TYW1 1059 aaPredicted RBP20.05■□□□□ 0.8
CDX1-202ENST00000616154 CEP135Q66GS9 1140 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 TMEM92Q6UXU6 159 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 SV2AQ7L0J3 742 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 ZC3H3Q8IXZ2 948 aaKnown RBP20.05■□□□□ 0.8
CDX1-202ENST00000616154 PHTF2Q8N3S3 785 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 IL17RCQ8NAC3 791 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 TXNDC5Q8NBS9 432 aaKnown RBP20.05■□□□□ 0.8
CDX1-202ENST00000616154 OLIG1Q8TAK6 271 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 EDEM2Q9BV94 578 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 KRT82Q9NSB4 513 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 CHORDC1Q9UHD1 332 aaPredicted RBP20.05■□□□□ 0.8
CDX1-202ENST00000616154 MAPK8IP1Q9UQF2 711 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 CEP295Q9C0D2 2601 aa20.05■□□□□ 0.8
CDX1-202ENST00000616154 SGK1O00141 431 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 AP1G2O75843 785 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 KLF8O95600 359 aaPredicted RBP20.04■□□□□ 0.8
CDX1-202ENST00000616154 P4HA1P13674 534 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 PTMSP20962 102 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 BCKDHBP21953 392 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 TNFRSF4P43489 277 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 KIR2DL1P43626 348 aaPredicted RBP20.04■□□□□ 0.8
CDX1-202ENST00000616154 GAD2Q05329 585 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 KDSRQ06136 332 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 SGSM1Q2NKQ1 1148 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 EOGTQ5NDL2 527 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 ACOT1Q86TX2 421 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 ZMIZ2Q8NF64 920 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 TAF4BQ92750 862 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 ELMO3Q96BJ8 720 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 CCSER2Q9H7U1 834 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 GMIPQ9P107 970 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 SH3BP1Q9Y3L3 701 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 PCDHA5Q9Y5H7 936 aa20.04■□□□□ 0.8
CDX1-202ENST00000616154 LNP1A1A4G5 178 aa20.03■□□□□ 0.8
CDX1-202ENST00000616154 HOXC11O43248 304 aaPredicted RBP20.03■□□□□ 0.8
CDX1-202ENST00000616154 KCNK5O95279 499 aa20.03■□□□□ 0.8
CDX1-202ENST00000616154 SMC2O95347 1197 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms