RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 KCNQ5Q9NR82 932 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 ZNF229Q9UJW7 825 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 LSM7Q9UK45 103 aaKnown RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 RUVBL2Q9Y230 463 aaKnown RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 KBTBD13C9JR72 458 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 RNF225M0QZC1 329 aaPredicted RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 CYB561D2O14569 222 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 MT-CO1P00395 513 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 HOXD10P28358 340 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 GEMP55040 296 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 RHBDL3P58872 404 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 DLG4P78352 724 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 MRNIPQ6NTE8 343 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 FAM83AQ86UY5 434 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 TEX12Q9BXU0 123 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 PIDD1Q9HB75 910 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 F8VP50 259 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 ATP6V1G2O95670 118 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 CYP2F1P24903 491 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 ATICP31939 592 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 SLC26A2P50443 739 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 CCDC85BQ15834 202 aaPredicted RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 COLGALT1Q8NBJ5 622 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 ATXN2LQ8WWM7 1075 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 IDI2Q9BXS1 227 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 KIAA1683Q9H0B3 1180 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 PIH1D1Q9NWS0 290 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 PDP2Q9P2J9 529 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 FAM32AQ9Y421 112 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 ANKRD63C9JTQ0 380 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 H3BRB1 525 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 CLASP2O75122 1294 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 GHRP10912 638 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 NDST1P52848 882 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 MGAT5Q09328 741 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 ITGA9Q13797 1035 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 MAPRE1Q15691 268 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 MAP4K3Q8IVH8 894 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 KAT2BQ92831 832 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 CNBD2Q96M20 576 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 TMEM237Q96Q45 408 aa14.46□□□□□ -0.09
CPSF1-212ENST00000616140 TUT1Q9H6E5 874 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 AAR2Q9Y312 384 aaKnown RBP14.46□□□□□ -0.09
CPSF1-212ENST00000616140 ASMTLO95671 621 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 ZSCAN5DPP0CG00 497 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 IRF1P10914 325 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 INSRRP14616 1297 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 HLA-DPA1P20036 260 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 CSE1LP55060 971 aaKnown RBP14.46□□□□□ -0.1
CPSF1-212ENST00000616140 PACS2Q86VP3 889 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 ADGRF2Q8IZF7 708 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 ETNPPLQ8TBG4 499 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 OSMRQ99650 979 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 ECSITQ9BQ95 431 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 KCNMB3Q9NPA1 279 aa14.46□□□□□ -0.1
CPSF1-212ENST00000616140 PREX1Q8TCU6 1659 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 HNRNPCL2B2RXH8 293 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 PRRG1O14668 218 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 SLURP2P0DP57 97 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 CRYMQ14894 314 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 FBXO47Q5MNV8 452 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 FAM117BQ6P1L5 589 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 UNC45BQ8IWX7 931 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 TAGLN3Q9UI15 199 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 TEKT2Q9UIF3 430 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 SNX13Q9Y5W8 968 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 KCNK1O00180 336 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 FCHO1O14526 889 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 PRPF4O43172 522 aaKnown RBP eCLIP14.45□□□□□ -0.11e-7■■■■■ 26.8
CPSF1-212ENST00000616140 SOAT2O75908 522 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 CBX6O95503 412 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 APOA1P02647 267 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 ADRA1DP25100 572 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 SERPINB10P48595 397 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 HARS2P49590 506 aaKnown RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 OLFML2BQ68BL8 750 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 TTC33Q6PID6 262 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 BNC2Q6ZN30 1099 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 ERO1BQ86YB8 467 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 EIF1ADQ8N9N8 165 aaKnown RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 THUMPD3Q9BV44 507 aaKnown RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 TMEM161AQ9NX61 479 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 NCKIPSDQ9NZQ3 722 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 CTNNAL1Q9UBT7 734 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 BARX2Q9UMQ3 279 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 VWA5AO00534 786 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 TBC1D4O60343 1298 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 CETPP11597 493 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 LRRC8BQ6P9F7 803 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 RAET1EQ8TD07 263 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 GTF3C2Q8WUA4 911 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-212ENST00000616140 TRAPPC12Q8WVT3 735 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 BRD8Q9H0E9 1235 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 DYRK4Q9NR20 520 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 SOX13Q9UN79 622 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 MEIS2O14770 477 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 CALCAP01258 141 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 ALBP02768 609 aa14.45□□□□□ -0.1
CPSF1-212ENST00000616140 CNTFP26441 200 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms