RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GOLGA1Q92805 767 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 FAM149B1Q96BN6 582 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 ABHD8Q96I13 439 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 HERPUD2Q9BSE4 406 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.93□□□□□ -0.02
USP39-220ENST00000613444 C2CD2LO14523 706 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 RNF8O76064 485 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 TRUB2O95900 331 aaKnown RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 ATP2A2P16615 1042 aaKnown RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 OR1D2P34982 312 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 PPM1AP35813 382 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 GLUD2P49448 558 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 CDO1Q16878 200 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SDHAF4Q5VUM1 108 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SYPL2Q5VXT5 272 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SCN4BQ8IWT1 228 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 C2orf15Q8WU43 125 aaKnown RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 FAM172AQ8WUF8 416 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 ZBED2Q9BTP6 218 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 POPDC2Q9HBU9 364 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 USP18Q9UMW8 372 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 TCRBV7S2A1N4TA0A589 114 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 C3orf70A6NLC5 250 aaPredicted RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 TRIM66O15016 1216 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SART1O43290 800 aaKnown RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 LILRB3O75022 631 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 FGF18O76093 207 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 HAPLN1P10915 354 aaPredicted RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 NOS2P35228 1153 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 GJC1P36383 396 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 PITX1P78337 314 aaPredicted RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 SLC25A52Q3SY17 297 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 TEX35Q5T0J7 233 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 COL13A1Q5TAT6 717 aaPredicted RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 KIAA1841Q6NSI8 718 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SLC13A5Q86YT5 568 aaPredicted RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 MMGT1Q8N4V1 131 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 RAPGEF5Q92565 580 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 ACSF2Q96CM8 615 aaPredicted RBP14.92□□□□□ -0.02
USP39-220ENST00000613444 NPY6RQ99463 290 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 AAASQ9NRG9 546 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 KLHL11Q9NVR0 708 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 IL37Q9NZH6 218 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 PCSK1NQ9UHG2 260 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 NAALADL1Q9UQQ1 740 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SLC27A5Q9Y2P5 690 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 PCDHB12Q9Y5F1 795 aa14.92□□□□□ -0.02
USP39-220ENST00000613444 SOAT2O75908 522 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 ENDOD1O94919 500 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 ABLIM3O94929 683 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 ZRANB2O95218 330 aaKnown RBP eCLIP14.91□□□□□ -0.02
USP39-220ENST00000613444 LTFP02788 710 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 PGFP49763 221 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 ATXN1P54253 815 aaKnown RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 DUSP4Q13115 394 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 SIX1Q15475 284 aaPredicted RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 SMTNL2Q2TAL5 461 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 DCAF6Q58WW2 860 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 KCNT1Q5JUK3 1230 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 SEL1L2Q5TEA6 688 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 VPS52Q8N1B4 723 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 STKLD1Q8NE28 680 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 CMASQ8NFW8 434 aaPredicted RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 UBXN4Q92575 508 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 DPF3Q92784 378 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 SLITRK1Q96PX8 696 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 TBCBQ99426 244 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 LBHD1Q9BQE6 289 aaPredicted RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 AP1M1Q9BXS5 423 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 EPC1Q9H2F5 836 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 NGRNQ9NPE2 291 aaKnown RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 LAMA3Q16787 3333 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 FSCN2O14926 492 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 KRT7P08729 469 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 USP46P62068 366 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 ELF2Q15723 593 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 HADHQ16836 314 aaKnown RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 LONRF2Q1L5Z9 754 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 STRADAQ7RTN6 431 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 GPR65Q8IYL9 337 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 RCOR2Q8IZ40 523 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 NUP93Q8N1F7 819 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 ZWILCHQ9H900 591 aa14.91□□□□□ -0.02
USP39-220ENST00000613444 DDX56Q9NY93 547 aaKnown RBP14.91□□□□□ -0.02
USP39-220ENST00000613444 FAM92AA1XBS5 289 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 PI4K2BG5E9Z4 385 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 TLL1O43897 1013 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 RARAP10276 462 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 KLF1Q13351 362 aaPredicted RBP14.9□□□□□ -0.02
USP39-220ENST00000613444 LLGL1Q15334 1064 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 TAZQ16635 292 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 C9orf50Q5SZB4 431 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 BSPRYQ5W0U4 402 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 MFSD7Q6UXD7 560 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 BEND5Q7L4P6 421 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 SCD5Q86SK9 330 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 KLHL23Q8NBE8 558 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 AUTS2Q8WXX7 1259 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 RNF25Q96BH1 459 aaPredicted RBP14.9□□□□□ -0.02
USP39-220ENST00000613444 SPATA17Q96L03 361 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms