RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 VPS16Q9H269 839 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 SMPD4Q9NXE4 827 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 TAB2Q9NYJ8 693 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 GTSE1Q9NYZ3 720 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 CLIC5Q9NZA1 410 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 LSM7Q9UK45 103 aaKnown RBP20.37■□□□□ 0.85
UPF1-212ENST00000601689 DNAJC12Q9UKB3 198 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.37■□□□□ 0.85
UPF1-212ENST00000601689 CNTN6Q9UQ52 1028 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 USP3Q9Y6I4 520 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 RNF225M0QZC1 329 aaPredicted RBP20.36■□□□□ 0.85
UPF1-212ENST00000601689 ARNTLO00327 626 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 CYP26A1O43174 497 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 THAP12O43422 761 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 ZBED1O96006 694 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 RARGP13631 454 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 BRD2P25440 801 aaKnown RBP20.36■□□□□ 0.85
UPF1-212ENST00000601689 PTPN5P54829 565 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 LRRC32Q14392 662 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 ANO6Q4KMQ2 910 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 MIIPQ5JXC2 388 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 CDKAL1Q5VV42 579 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 GPRIN1Q7Z2K8 1008 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 TMEM105Q8N8V8 129 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 KCTD13Q8WZ19 329 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 HSFY1Q96LI6 401 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 PCMTD1Q96MG8 357 aaPredicted RBP20.36■□□□□ 0.85
UPF1-212ENST00000601689 BPIFA3Q9BQP9 254 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 FOXQ1Q9C009 403 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 EBF3Q9H4W6 596 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 CYLDQ9NQC7 956 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 CNGB3Q9NQW8 809 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 DNMT3LQ9UJW3 386 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 STRIP2Q9ULQ0 834 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 NDRG2Q9UN36 371 aaKnown RBP20.36■□□□□ 0.85
UPF1-212ENST00000601689 CEP83Q9Y592 693 aa20.36■□□□□ 0.85
UPF1-212ENST00000601689 KMT2EQ8IZD2 1858 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 E2F8A0AVK6 867 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 SPECC1L-ADORA2AF8WAN1 911 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 ZNF132P52740 706 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 SNX16P57768 344 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 RAPGEF1Q13905 1077 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 KRT31Q15323 416 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 MEA1Q16626 185 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 RAB41Q5JT25 222 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 C10orf120Q5SQS8 335 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 BTBD8Q5XKL5 378 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 KLHDC10Q6PID8 442 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 ZNF276Q8N554 614 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 OTUB2Q96DC9 234 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 PDCL3Q9H2J4 239 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 CCSER2Q9H7U1 834 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 OLA1Q9NTK5 396 aaKnown RBP20.35■□□□□ 0.85
UPF1-212ENST00000601689 CFAP97Q9P2B7 532 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 DAAM1Q9Y4D1 1078 aa20.35■□□□□ 0.85
UPF1-212ENST00000601689 A0A1W2PQH9 124 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 GALR2O43603 387 aaPredicted RBP20.34■□□□□ 0.85
UPF1-212ENST00000601689 DCNP07585 359 aaKnown RBP20.34■□□□□ 0.85
UPF1-212ENST00000601689 CD72P21854 359 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 CTHP32929 405 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 ACADSBP45954 432 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 ZNF165P49910 485 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 YWHAGP61981 247 aaKnown RBP eCLIP20.34■□□□□ 0.85
UPF1-212ENST00000601689 TNK2Q07912 1038 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 PPP2R5DQ14738 602 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 FILIP1LQ4L180 1135 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 GJB7Q6PEY0 223 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 AOPEPQ8N6M6 819 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 DTWD2Q8NBA8 298 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 TTC8Q8TAM2 541 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 RNF139Q8WU17 664 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 ZNF606Q8WXB4 792 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 TFAP2BQ92481 460 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 SHC3Q92529 594 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 SECISBP2LQ93073 1101 aaKnown RBP20.34■□□□□ 0.85
UPF1-212ENST00000601689 NOX5Q96PH1 765 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 IER2Q9BTL4 223 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 LSM14BQ9BX40 385 aaKnown RBP20.34■□□□□ 0.85
UPF1-212ENST00000601689 ECT2Q9H8V3 914 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 ZNF318Q5VUA4 2279 aa20.34■□□□□ 0.85
UPF1-212ENST00000601689 KIF26AQ9ULI4 1882 aaPredicted RBP20.33■□□□□ 0.85
UPF1-212ENST00000601689 SART1O43290 800 aaKnown RBP20.33■□□□□ 0.85
UPF1-212ENST00000601689 PI15O43692 258 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 FBXO21O94952 628 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 CAVIN2O95810 425 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 LCP1P13796 627 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 KRT9P35527 623 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 COG7P83436 770 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 ADIGQ0VDE8 80 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 GRSF1Q12849 480 aaKnown RBP eCLIP20.33■□□□□ 0.85
UPF1-212ENST00000601689 DGKKQ5KSL6 1271 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 IER5LQ5T953 404 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 TRIM68Q6AZZ1 485 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 PM20D1Q6GTS8 502 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 CCDC105Q8IYK2 499 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 CCDC26Q8TAB7 109 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 SLC35F5Q8WV83 523 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 TRIM62Q9BVG3 475 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 ULBP1Q9BZM6 244 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 ST7Q9NRC1 585 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms