RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	LPAL2	Q16609	132 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	WDR72	Q3MJ13	1102 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	PRR23B	Q6ZRT6	265 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	TOGARAM2	Q6ZUX3	1019 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	ENOSF1	Q7L5Y1	443 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	ZSCAN30	Q86W11	494 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	LRRC52	Q8N7C0	313 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	UBR7	Q8N806	425 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	FAM81B	Q96LP2	452 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	GCNA	Q96QF7	691 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	TMEM209	Q96SK2	561 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	DESI2	Q9BSY9	194 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	SDCBP2	Q9H190	292 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	HAUS4	Q9H6D7	363 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	SMYD3	Q9H7B4	428 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	VRTN	Q9H8Y1	702 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	PCDHB4	Q9Y5E5	795 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	CHURC1-FNTB	B4DL54	471 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	PIR	O00625	290 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	CYP26A1	O43174	497 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SOAT2	O75908	522 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	STAU1	O95793	577 aa	Known RBP	13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	WEE1	P30291	646 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	CDC25C	P30307	473 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	PRKCI	P41743	596 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	FNTB	P49356	437 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	TNNC1	P63316	161 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SPEM2	Q0P670	501 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SMARCB1	Q12824	385 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	MYO1E	Q12965	1108 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SIM2	Q14190	667 aa	Predicted RBP	13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	TXNDC11	Q6PKC3	985 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	METTL23	Q86XA0	190 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	FAM71A	Q8IYT1	594 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ACRBP	Q8NEB7	543 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	OR10T2	Q8NGX3	314 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	KIAA1524	Q8TCG1	905 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	BPIFB1	Q8TDL5	484 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SLC20A1	Q8WUM9	679 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ZNF560	Q96MR9	790 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SEPT5	Q99719	369 aa	Predicted RBP	13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ZCWPW1	Q9H0M4	648 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	DEF6	Q9H4E7	631 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	TASP1	Q9H6P5	420 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ACP6	Q9NPH0	428 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	CISH	Q9NSE2	258 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	RBM12	Q9NTZ6	932 aa	Known RBP	13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	SPTLC3	Q9NUV7	552 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	GTSE1	Q9NYZ3	720 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ZMYM5	Q9UJ78	669 aa		13.41	□□□□□ -0.26
UPF1-208	ENST00000600012	ACACB	O00763	2458 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	OBSL1	O75147	1896 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	MYH10	P35580	1976 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012		K7ESF4	209 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	PRAMEF12	O95522	483 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	ATF6	P18850	670 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	CLCN1	P35523	988 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	CYLC1	P35663	651 aa	Predicted RBP	13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	TAF6	P49848	677 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	KIF11	P52732	1056 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	CDH8	P55286	799 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	PTK2	Q05397	1052 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	TAF12	Q16514	161 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	MGAT5B	Q3V5L5	792 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SV2C	Q496J9	727 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SLC39A12	Q504Y0	691 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012		Q6ZS52	159 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	LONP2	Q86WA8	852 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	THEM5	Q8N1Q8	247 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SYNPO	Q8N3V7	929 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	OLIG1	Q8TAK6	271 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SPPL2B	Q8TCT7	592 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	NETO1	Q8TDF5	533 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	C2orf15	Q8WU43	125 aa	Known RBP	13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	ZFYVE19	Q96K21	471 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	CCDC42	Q96M95	316 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	LRRC3B	Q96PB8	259 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	LPIN3	Q9BQK8	851 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	IL21	Q9HBE4	155 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	THG1L	Q9NWX6	298 aa	Known RBP	13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SNX9	Q9Y5X1	595 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	GREB1	Q4ZG55	1949 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SDK1	Q7Z5N4	2213 aa		13.4	□□□□□ -0.26
UPF1-208	ENST00000600012	SSU72P8	A0A1W2PR75	194 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	DCDC2B	A2VCK2	349 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	CYB561D2	O14569	222 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	HR	O43593	1189 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	FOXD2	O60548	495 aa	Predicted RBP	13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	NDUFA10	O95299	355 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	P4HA1	P13674	534 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	MSN	P26038	577 aa	Known RBP	13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	HOXA6	P31267	233 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	CYP4F8	P98187	520 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	DMWD	Q09019	674 aa		13.39	□□□□□ -0.27
UPF1-208	ENST00000600012	CCIN	Q13939	588 aa		13.39	□□□□□ -0.27

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