RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 YWHAEP62258 255 aaKnown RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 ZRSR2Q15696 482 aaKnown RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 C6orf163Q5TEZ5 329 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 EEF1DP3Q658K8 133 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 CIAPIN1Q6FI81 312 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 BBS12Q6ZW61 710 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 FLAD1Q8NFF5 587 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 RDM1Q8NG50 284 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 APOPT1Q96IL0 206 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 PPP1R36Q96LQ0 422 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 GMLQ99445 158 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 VPS11Q9H270 941 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 PDLIM7Q9NR12 457 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 SCOCQ9UIL1 159 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 STRIP2Q9ULQ0 834 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 LOC100653049A0A140TA62 436 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 TBC1D12O60347 775 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 KRT34O76011 436 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 KRT37O76014 449 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 WFS1O76024 890 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 ITGBL1O95965 494 aaPredicted RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 HNRNPCP07910 306 aaKnown RBP eCLIP15.87■□□□□ 0.13
UPF1-204ENST00000596842 GMPRP36959 345 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 BCAR1P56945 870 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 SLC25A11Q02978 314 aaKnown RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 ZBTB8OSQ8IWT0 167 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 UNC5BQ8IZJ1 945 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 NRG4Q8WWG1 115 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 E2F7Q96AV8 911 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 MTO1Q9Y2Z2 717 aaKnown RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 LTBP1Q14766 1721 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 TXNDC9O14530 226 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 ADCY3O60266 1144 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 CLCN3P51790 818 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 CFAP157Q5JU67 520 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 C7orf31Q8N865 590 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 C12orf29Q8N999 325 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 TEX13BQ9BXU2 312 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 FAM49BQ9NUQ9 324 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 PACSIN3Q9UKS6 424 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 LRRC42Q9Y546 428 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 NRXN2Q9P2S2 1712 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 HMGCRP04035 888 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 PDE1CQ14123 709 aaPredicted RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 PPP2R5DQ14738 602 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 CTC1Q2NKJ3 1217 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 TRMT10BQ6PF06 316 aaKnown RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 POLNQ7Z5Q5 900 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 RXFP2Q8WXD0 754 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 LY75O60449 1722 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 A0A1B0GVG6 124 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 LYPLA1O75608 230 aaPredicted RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 DPEP1P16444 411 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 ACBD5Q5T8D3 534 aaPredicted RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 LRRC38Q5VT99 294 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 DRICH1Q6PGQ1 229 aaPredicted RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 DLK2Q6UY11 383 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 TREML1Q86YW5 311 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 ZNF280CQ8ND82 737 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 RBM15BQ8NDT2 890 aaKnown RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 FGD4Q96M96 766 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 MAGEB5Q9BZ81 275 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 DHX33Q9H6R0 707 aaKnown RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 SAR1AQ9NR31 198 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 MRPS35P82673 323 aaKnown RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 PEX6Q13608 980 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 WDR49Q8IV35 697 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 TMEM174Q8WUU8 243 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 ALKBH8Q96BT7 664 aaKnown RBP15.86■□□□□ 0.13
UPF1-204ENST00000596842 EBF4Q9BQW3 602 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 SEPT10Q9P0V9 454 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 C2CD2Q9Y426 696 aa15.86■□□□□ 0.13
UPF1-204ENST00000596842 SIGLEC16A6NMB1 481 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 OGTO15294 1046 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 MAFGO15525 162 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 GRIA1P42261 906 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 NEK3P51956 506 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 SLC34A1Q06495 639 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 CCNJLQ8IV13 435 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 SHKBP1Q8TBC3 707 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 DEPDC1BQ8WUY9 529 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 PEBP4Q96S96 227 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 ACSS2Q9NR19 701 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 HACL1Q9UJ83 578 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 ZNF214Q9UL59 606 aaPredicted RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 APOC4-APOC2K7ER74 178 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 LSM8O95777 96 aaKnown RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 APOC2P02655 101 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 NFICP08651 508 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 DLDP09622 509 aaKnown RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 KCNA4P22459 653 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 EIF4BP23588 611 aaKnown RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 RPL10AP62906 217 aaKnown RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 LAMTOR4Q0VGL1 99 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 TNFAIP1Q13829 316 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 CRLF3Q8IUI8 442 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 KCNK13Q9HB14 408 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 AFG3L2Q9Y4W6 797 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 SLC4A7Q9Y6M7 1214 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms