RNA–Protein interactions for RNA: ENST00000593597.1

USE1-203, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-203ENST00000593597 CHORDC1Q9UHD1 332 aaPredicted RBP11.32□□□□□ -0.6
USE1-203ENST00000593597 SERTAD1Q9UHV2 236 aa11.32□□□□□ -0.6
USE1-203ENST00000593597 ANGPTL2Q9UKU9 493 aa11.32□□□□□ -0.6
USE1-203ENST00000593597 R3HCC1Q9Y3T6 440 aaKnown RBP11.32□□□□□ -0.6
USE1-203ENST00000593597 ATXN2Q99700 1313 aaKnown RBP11.32□□□□□ -0.6
USE1-203ENST00000593597 PCNX2A6NKB5 2137 aa11.32□□□□□ -0.6
USE1-203ENST00000593597 MUC22E2RYF6 1773 aaPredicted RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 DSPP15924 2871 aaKnown RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 NBEAQ8NFP9 2946 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 PVALEFA0A1B0GWK0 134 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 E2F8A0AVK6 867 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 HHLA1C9JL84 531 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 HOXC11O43248 304 aaPredicted RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 EXOC3O60645 756 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 F13A1P00488 732 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 ZSCAN22P10073 491 aaPredicted RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 EIF2DP41214 584 aaKnown RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 PTGER3P43115 390 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 ASPAP45381 313 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 SNRPFP62306 86 aaKnown RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 IRX4P78413 519 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 AMPD3Q01432 767 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 TRPC3Q13507 836 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 NCOA4Q13772 614 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 ZNF699Q32M78 642 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 ACOT1Q86TX2 421 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 TMEM25Q86YD3 366 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 NAT16Q8N8M0 369 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 OVCA2Q8WZ82 227 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 SYAP1Q96A49 352 aaPredicted RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 EXOC4Q96A65 974 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 ZNF396Q96N95 335 aaPredicted RBP11.31□□□□□ -0.6
USE1-203ENST00000593597 SLITRK1Q96PX8 696 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 CSNK1G1Q9HCP0 422 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 CD93Q9NPY3 652 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 FSCN3Q9NQT6 498 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 ARHGEF4Q9NR80 690 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 KRT82Q9NSB4 513 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 FREM2Q5SZK8 3169 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 CKAP5Q14008 2032 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 PKD1L2Q7Z442 2459 aa11.31□□□□□ -0.6
USE1-203ENST00000593597 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 TULP3O75386 442 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 AP1G2O75843 785 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 RTN3O95197 1032 aaPredicted RBP11.3□□□□□ -0.6
USE1-203ENST00000593597 TBX18O95935 607 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 APODP05090 189 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 IRF1P10914 325 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 SPINK2P20155 84 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 NDST1P52848 882 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 BIRC3Q13489 604 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 ZACNQ401N2 412 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 USP39Q53GS9 565 aaKnown RBP11.3□□□□□ -0.6
USE1-203ENST00000593597 HECTD3Q5T447 861 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 ARMCX6Q7L4S7 300 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 CYP2U1Q7Z449 544 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 TTC30AQ86WT1 665 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 SLC9A9Q8IVB4 645 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 TMEFF1Q8IYR6 380 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 C12orf29Q8N999 325 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 PDZD8Q8NEN9 1154 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 SLC2A14Q8TDB8 520 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 TMEM174Q8WUU8 243 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 SMARCD1Q96GM5 515 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 ACOX2Q99424 681 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 DUSP9Q99956 384 aaKnown RBP11.3□□□□□ -0.6
USE1-203ENST00000593597 NMUR1Q9HB89 426 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 APOBEC3GQ9HC16 384 aaKnown RBP11.3□□□□□ -0.6
USE1-203ENST00000593597 DMAP1Q9NPF5 467 aaPredicted RBP11.3□□□□□ -0.6
USE1-203ENST00000593597 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.3□□□□□ -0.65e-8■■■■■ 188.3
USE1-203ENST00000593597 FAM49BQ9NUQ9 324 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 EHD2Q9NZN4 543 aa11.3□□□□□ -0.6
USE1-203ENST00000593597 RALYQ9UKM9 306 aaKnown RBP11.3□□□□□ -0.6
USE1-203ENST00000593597 A0A1W2PQF6 199 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 TCRBV21S2A2A0A5A6 115 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 C1QTNF9BB2RNN3 333 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 SLC9A3R1O14745 358 aaPredicted RBP11.29□□□□□ -0.6
USE1-203ENST00000593597 MDM4O15151 490 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 CYP26A1O43174 497 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 PHACTR2O75167 634 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 ADH1CP00326 375 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 ASS1P00966 412 aaKnown RBP11.29□□□□□ -0.6
USE1-203ENST00000593597 PRR29P0C7W0 189 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 C1QTNF9P0C862 333 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 GABRG2P18507 467 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 GRIA2P42262 883 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 WASP42768 502 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 DHPSP49366 369 aaPredicted RBP11.29□□□□□ -0.6
USE1-203ENST00000593597 TUBP50607 506 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 NOVA1P51513 510 aaKnown RBP11.29□□□□□ -0.6
USE1-203ENST00000593597 DNM1Q05193 864 aaKnown RBP11.29□□□□□ -0.6
USE1-203ENST00000593597 KMT5BQ4FZB7 885 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 ZNF667Q5HYK9 610 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 SH3PXD2AQ5TCZ1 1133 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 PEAR1Q5VY43 1037 aaPredicted RBP11.29□□□□□ -0.6
USE1-203ENST00000593597 EGFLAMQ63HQ2 1017 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 TOGARAM2Q6ZUX3 1019 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 SV2AQ7L0J3 742 aa11.29□□□□□ -0.6
USE1-203ENST00000593597 DDX42Q86XP3 938 aaKnown RBP eCLIP11.29□□□□□ -0.6
USE1-203ENST00000593597 CRYBG2Q8N1P7 616 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms