RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 DUSP4Q13115 394 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 ATAT1Q5SQI0 421 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 RETSATQ6NUM9 610 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 DENND1BQ6P3S1 775 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 SYDE1Q6ZW31 735 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 DDX42Q86XP3 938 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIG3-216ENST00000593099 SMC6Q96SB8 1091 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 IRX2Q9BZI1 471 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 PFDN4Q9NQP4 134 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 FBXL5Q9UKA1 691 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 EBAG9O00559 213 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 PIGRP01833 764 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 MT-ND3P03897 115 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 NOS2P35228 1153 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 GEMIN4P57678 1058 aaKnown RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 BYSLQ13895 437 aaKnown RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 PDE1CQ14123 709 aaPredicted RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 SETDB1Q15047 1291 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 KDELC2Q7Z4H8 507 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 FAM71AQ8IYT1 594 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 EPS8L1Q8TE68 723 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 SMG7Q92540 1137 aaKnown RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 BTBD6Q96KE9 485 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 MRPL45Q9BRJ2 306 aaKnown RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 CARD9Q9H257 536 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 AVENQ9NQS1 362 aaPredicted RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 RAB6BQ9NRW1 208 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 PAK5Q9P286 719 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 DNMT3LQ9UJW3 386 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 A6NNZ2 444 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 ATP9BO43861 1147 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 SYNCRIPO60506 623 aaKnown RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 FGF19O95750 216 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 TYMPP19971 482 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 GPM6BQ13491 265 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 STARD3Q14849 445 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 TUBB8Q3ZCM7 444 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 KCNT1Q5JUK3 1230 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 IZUMO3Q5VZ72 239 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 TTC23LQ6PF05 361 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 EPM2AIP1Q7L775 607 aaPredicted RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 TAS2R42Q7RTR8 314 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 C3orf20Q8ND61 904 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 ATP6V1E2Q96A05 226 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 FAM84AQ96KN4 292 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 RMDN2Q96LZ7 410 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 TRIM4Q9C037 500 aa10.21□□□□□ -0.77
LIG3-216ENST00000593099 DDX60Q8IY21 1712 aaKnown RBP10.21□□□□□ -0.77
LIG3-216ENST00000593099 A0A0A6YYK5 440 aaPredicted RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 RBM47A0AV96 593 aaKnown RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 MYADML2A6NDP7 307 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 USP27XA6NNY8 438 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 GMNNO75496 209 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 LILRA4P59901 499 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 KCNT2Q6UVM3 1135 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 SNF8Q96H20 258 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 TCF25Q9BQ70 676 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 ZSWIM1Q9BR11 485 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 TRIM56Q9BRZ2 755 aaKnown RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 TBC1D13Q9NVG8 400 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 NAV1Q8NEY1 1877 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 ASMTLO95671 621 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 C4BPAP04003 597 aaKnown RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 BLVRAP53004 296 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 MRPS25P82663 173 aaKnown RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 GHRHRQ02643 423 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 ASPHQ12797 758 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 LPIN1Q14693 890 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 TARBP2Q15633 366 aaKnown RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 ZKSCAN8Q15776 578 aaPredicted RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 DDR2Q16832 855 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 TIGD7Q6NT04 549 aaPredicted RBP10.21□□□□□ -0.78
LIG3-216ENST00000593099 C4orf22Q6V702 233 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 DCUN1D1Q96GG9 259 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 PACSIN1Q9BY11 444 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 GOLPH3Q9H4A6 298 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 MINDY3Q9H8M7 445 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 NUDT5Q9UKK9 219 aa10.21□□□□□ -0.78
LIG3-216ENST00000593099 KRT37O76014 449 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 APRTP07741 180 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 TAF1BQ53T94 588 aaPredicted RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 ATAD1Q8NBU5 361 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 MGARPQ8TDB4 240 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 TFB1MQ8WVM0 346 aaKnown RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 SCG3Q8WXD2 468 aaKnown RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 DUSP16Q9BY84 665 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 FLRT1Q9NZU1 646 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 MID2Q9UJV3 735 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 LRP5O75197 1615 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 KIAA0100Q14667 2235 aaKnown RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 DDX3XO00571 662 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIG3-216ENST00000593099 PHF2O75151 1096 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 SPATA31D3P0C874 917 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 RARGP13631 454 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 GABRR2P28476 465 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 PRKCIP41743 596 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 SESN2P58004 480 aaPredicted RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 ENPEPQ07075 957 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 MIIPQ5JXC2 388 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 VARS2Q5ST30 1063 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms