RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 POMCP01189 267 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 SDSP20132 328 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 CCNE1P24864 410 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 MCM2P49736 904 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 GPC3P51654 580 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 SCRN1Q12765 414 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 DRP2Q13474 957 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 SF3A1Q15459 793 aaKnown RBP8.6□□□□□ -1.03
SMAD4-209ENST00000589941 SF1Q15637 639 aaKnown RBP8.6□□□□□ -1.03
SMAD4-209ENST00000589941 UBE2SQ16763 222 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 UAP1L1Q3KQV9 507 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 OGFOD2Q6N063 350 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 MPZL3Q6UWV2 235 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 CYP2R1Q6VVX0 501 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 FAM43BQ6ZT52 329 aaPredicted RBP8.6□□□□□ -1.03
SMAD4-209ENST00000589941 SMARCC2Q8TAQ2 1214 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 HDAC7Q8WUI4 952 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 SREK1Q8WXA9 508 aaKnown RBP8.6□□□□□ -1.03
SMAD4-209ENST00000589941 FAM227BQ96M60 508 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 MBOAT7Q96N66 472 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 GPRC5CQ9NQ84 441 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 JADE2Q9NQC1 790 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 IMPACTQ9P2X3 320 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 CACNG4Q9UBN1 327 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 ZDHHC9Q9Y397 364 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 PCDHGA5Q9Y5G8 931 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 UBR5O95071 2799 aaPredicted RBP8.59□□□□□ -1.03
SMAD4-209ENST00000589941 PLXND1Q9Y4D7 1925 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 LRRC10BA6NIK2 292 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 MAN2B1O00754 1011 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 DCLK1O15075 740 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 ARHGAP6O43182 974 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 ADAM12O43184 909 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 ZNF500O60304 480 aaPredicted RBP8.59□□□□□ -1.03
SMAD4-209ENST00000589941 HBP1O60381 514 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 HMMRO75330 724 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 C8AP07357 584 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 MSL3P1P0C860 447 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 MCM5P33992 734 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 SEPHS1P49903 392 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 ANAPC15P60006 121 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 SIM1P81133 766 aaPredicted RBP8.59□□□□□ -1.03
SMAD4-209ENST00000589941 CREB5Q02930 508 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 SERINC3Q13530 473 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 PLK5Q496M5 336 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 DAB2IPQ5VWQ8 1189 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 HLA-DQA1Q5Y7H0 255 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 EEF1DP3Q658K8 133 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 TWF2Q6IBS0 349 aaKnown RBP8.59□□□□□ -1.03
SMAD4-209ENST00000589941 GALNT18Q6P9A2 607 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 CACNA2D4Q7Z3S7 1137 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 ZNF843Q8N446 348 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 RABGGTAQ92696 567 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 ESR2Q92731 530 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 INTS4Q96HW7 963 aaKnown RBP8.59□□□□□ -1.03
SMAD4-209ENST00000589941 CDHR1Q96JP9 859 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 KRTAP4-8Q9BYQ9 185 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 EPN3Q9H201 632 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 RIOX1Q9H6W3 641 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 BRD9Q9H8M2 597 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 TMEM9BQ9NQ34 198 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 CHST12Q9NRB3 414 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 KCNH7Q9NS40 1196 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 DNMT3BQ9UBC3 853 aaKnown RBP8.59□□□□□ -1.03
SMAD4-209ENST00000589941 DPP7Q9UHL4 492 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 FAN1Q9Y2M0 1017 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 TAF6LQ9Y6J9 622 aa8.59□□□□□ -1.03
SMAD4-209ENST00000589941 URB1O60287 2271 aaKnown RBP8.58□□□□□ -1.04
SMAD4-209ENST00000589941 A0A1W2PQU0 124 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 FAM221BA6H8Z2 402 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 SLC38A8A6NNN8 435 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 ARNTLO00327 626 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 CCDC192P0DO97 292 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 PRKCAP17252 672 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 GRIA2P42262 883 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 MVKQ03426 396 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 ZSCAN23Q3MJ62 389 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 PABPC1LQ4VXU2 614 aaKnown RBP8.58□□□□□ -1.04
SMAD4-209ENST00000589941 ZNF484Q5JVG2 852 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 CASC1Q6TDU7 716 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 VITQ6UXI7 678 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 ABHD15Q6UXT9 468 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 CPNE8Q86YQ8 564 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 COLGALT2Q8IYK4 626 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 NUP43Q8NFH3 380 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 SLC7A14Q8TBB6 771 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 ELSPBP1Q96BH3 223 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 TRIM44Q96DX7 344 aaPredicted RBP8.58□□□□□ -1.04
SMAD4-209ENST00000589941 DIRC2Q96SL1 478 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 TMEM175Q9BSA9 504 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 ZNF334Q9HCZ1 680 aaPredicted RBP8.58□□□□□ -1.04
SMAD4-209ENST00000589941 DACT1Q9NYF0 836 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 NOL7Q9UMY1 257 aaKnown RBP8.58□□□□□ -1.04
SMAD4-209ENST00000589941 PIN4Q9Y237 131 aaKnown RBP8.58□□□□□ -1.04
SMAD4-209ENST00000589941 TRIP11Q15643 1979 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 MYO9AB2RTY4 2548 aa8.58□□□□□ -1.04
SMAD4-209ENST00000589941 NFASCO94856 1347 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 PTPRQQ9UMZ3 2332 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 RELNP78509 3460 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 BCLAF3A2AJT9 711 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms