RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	GRAP2	O75791	330 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	CAPN15	O75808	1086 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	KRT14	P02533	472 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	CXCL10	P02778	98 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	RALA	P11233	206 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	PAX3	P23760	479 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	HSPA9	P38646	679 aa	Known RBP	16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	GUCY2D	Q02846	1103 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	LMNB2	Q03252	620 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	ACAP1	Q15027	740 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	TRADD	Q15628	312 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	PPP2R5E	Q16537	467 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	TRIM60	Q495X7	471 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SH3PXD2A	Q5TCZ1	1133 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	AGBL2	Q5U5Z8	902 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	C1orf53	Q5VUE5	145 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	KCTD16	Q68DU8	428 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	CLEC20A	Q6ZU45	233 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	POLN	Q7Z5Q5	900 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	PIGZ	Q86VD9	579 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	ZDHHC17	Q8IUH5	632 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	DNAJC5G	Q8N7S2	189 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	C12orf50	Q8NA57	414 aa	Predicted RBP	16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	RXFP2	Q8WXD0	754 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SEPT8	Q92599	483 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	PCED1B	Q96HM7	432 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	TOX2	Q96NM4	488 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	PKMYT1	Q99640	499 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	CNPY3	Q9BT09	278 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	HIPK3	Q9H422	1215 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SLC24A3	Q9HC58	644 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	EPB41L5	Q9HCM4	733 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	TMEM30A	Q9NV96	361 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	VWA8	A3KMH1	1905 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	PI4K2B	G5E9Z4	385 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	DPYSL4	O14531	572 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	TTI1	O43156	1089 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	ATP6V1G2	O95670	118 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	MYZAP	P0CAP1	466 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	NPR3	P17342	541 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	GPD1	P21695	349 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	TLE2	Q04725	743 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	RAB6C	Q53S08	254 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SLC26A9	Q7LBE3	791 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	URGCP	Q8TCY9	931 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	CASKIN2	Q8WXE0	1202 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	RAPGEF5	Q92565	580 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	APBB2	Q92870	758 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	ACSF2	Q96CM8	615 aa	Predicted RBP	16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SEC16B	Q96JE7	1060 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	FAM210A	Q96ND0	272 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SLITRK1	Q96PX8	696 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	RAB6C	Q9H0N0	254 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	HAUS2	Q9NVX0	235 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	16.09	■□□□□ 0.17	7e-6	■□□□□ 10.1
DDX39A-209	ENST00000589318	DNAJB4	Q9UDY4	337 aa		16.09	■□□□□ 0.17
DDX39A-209	ENST00000589318	C3orf70	A6NLC5	250 aa	Predicted RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	TMEM189-UBE2V1	I3L0A0	370 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	PDGFRA	P16234	1089 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CHRNA3	P32297	505 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	SCNN1A	P37088	669 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	ACADSB	P45954	432 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CARS	P49589	748 aa	Known RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCNH	P51946	323 aa	Predicted RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCL23	P55773	120 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	C15orf59	Q2T9L4	293 aa	Predicted RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC14	Q49A88	953 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	MFSD7	Q6UXD7	560 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	MAATS1	Q7Z4T9	603 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CTU1	Q7Z7A3	348 aa	Known RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM35A	Q86V20	835 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	RCOR2	Q8IZ40	523 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC26	Q8TAB7	109 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	SEC14L1	Q92503	715 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	RNF25	Q96BH1	459 aa	Predicted RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	LRRC45	Q96CN5	670 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CASD1	Q96PB1	797 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	ACBD6	Q9BR61	282 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	OSBPL8	Q9BZF1	889 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	CNOT10	Q9H9A5	744 aa	Known RBP	16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	NOD2	Q9HC29	1040 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	KANSL3	Q9P2N6	904 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	PCYOX1	Q9UHG3	505 aa		16.08	■□□□□ 0.16
DDX39A-209	ENST00000589318	KRT1	P04264	644 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	LCP1	P13796	627 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PCSK1	P29120	753 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	MIP	P30301	263 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PCK1	P35558	622 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PTGIR	P43119	386 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	GATM	P50440	423 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	SEC24C	P53992	1094 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	CACNA2D1	P54289	1103 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	SNX16	P57768	344 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM171B	Q6P995	826 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM43B	Q6ZT52	329 aa	Predicted RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ZMIZ2	Q8NF64	920 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	OR10T2	Q8NGX3	314 aa		16.07	■□□□□ 0.16

Retrieved 100 of 20,778 RNA–protein pairs in 25 ms