RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 ASIC3Q9UHC3 531 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 USP18Q9UMW8 372 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 ZNF148Q9UQR1 794 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 LAMA2P24043 3122 aaKnown RBP9.71□□□□□ -0.85
SS18-220ENST00000582092 TCRBV5S1A1TA0A578 114 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 CARNS1A5YM72 827 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 MEIS3P2A8K0S8 358 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 RFXAPO00287 272 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 MAP2K7O14733 419 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 TADA2AO75478 443 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 AP1G2O75843 785 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 DGKIO75912 1065 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 FBXO21O94952 628 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 TRUB2O95900 331 aaKnown RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 FGFR1P11362 822 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 ATF2P15336 505 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 NPR3P17342 541 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 CTNNB1P35222 781 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 PCK1P35558 622 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 SCNN1AP37088 669 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 ADCY8P40145 1251 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 OR1G1P47890 313 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 DRG2P55039 364 aaKnown RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 ATP11AP98196 1134 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 CAV1Q03135 178 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 GPM6BQ13491 265 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 TFDP2Q14188 446 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 ADGRE1Q14246 886 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 PDK2Q15119 407 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 UPP1Q16831 310 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 SPOUT1Q5T280 376 aaKnown RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 DAB2IPQ5VWQ8 1189 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 OVOS1Q6IE37 1185 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 OSTM1Q86WC4 334 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 SPATA2LQ8IUW3 424 aaPredicted RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 C12orf50Q8NA57 414 aaPredicted RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 UBLCP1Q8WVY7 318 aaPredicted RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 ATXN2LQ8WWM7 1075 aaKnown RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 RSPH1Q8WYR4 309 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 PPP2R3CQ969Q6 453 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 SMARCD1Q96GM5 515 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 FMO2Q99518 471 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 TRIM51Q9BSJ1 452 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 COLEC11Q9BWP8 271 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 OSBPL7Q9BZF2 842 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 DCLK3Q9C098 648 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 LMAN2LQ9H0V9 348 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 ELAC1Q9H777 363 aaKnown RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 MED4Q9NPJ6 270 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 STAP1Q9ULZ2 295 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 EFR3BQ9Y2G0 817 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 SNX24Q9Y343 169 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 TIMM13Q9Y5L4 95 aaPredicted RBP9.71□□□□□ -0.86
SS18-220ENST00000582092 MTCH2Q9Y6C9 303 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 SCN1AP35498 2009 aa9.71□□□□□ -0.86
SS18-220ENST00000582092 C2CD4BA6NLJ0 364 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 H3BNC9 293 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 GABRDO14764 452 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 POLR3GO15318 223 aaPredicted RBP9.7□□□□□ -0.86
SS18-220ENST00000582092 ATP2C2O75185 946 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 ITIH2P19823 946 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 KDELR1P24390 212 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 MIPP30301 263 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 PTPN7P35236 360 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 ACTN2P35609 894 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 BMPR1AP36894 532 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 PLA2G4AP47712 749 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 KCNJ1P48048 391 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 PLTPP55058 493 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 CDH6P55285 790 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 MAP3K7CLP57077 242 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 MRPS5P82675 430 aaKnown RBP9.7□□□□□ -0.86
SS18-220ENST00000582092 OGDHQ02218 1023 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 KRT17Q04695 432 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 IFFO1Q0D2I5 559 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 SMTNL2Q2TAL5 461 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 ATP13A4Q4VNC1 1196 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 PAN2Q504Q3 1202 aaKnown RBP9.7□□□□□ -0.86
SS18-220ENST00000582092 PKDCCQ504Y2 493 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 TIGD5Q53EQ6 642 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 MFSD7Q6UXD7 560 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 C4orf50Q6ZRC1 276 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 LIMS2Q7Z4I7 341 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 DCP1BQ8IZD4 617 aaKnown RBP9.7□□□□□ -0.86
SS18-220ENST00000582092 CCDC89Q8N998 374 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 MYCBPAPQ8TBZ2 947 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 FAM71BQ8TC56 605 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 GDPD5Q8WTR4 605 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 FAM172AQ8WUF8 416 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 RSAD2Q8WXG1 361 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 ZNF689Q96CS4 500 aaPredicted RBP9.7□□□□□ -0.86
SS18-220ENST00000582092 MRPL38Q96DV4 380 aaKnown RBP9.7□□□□□ -0.86
SS18-220ENST00000582092 SNF8Q96H20 258 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 TBCBQ99426 244 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 LPIN3Q9BQK8 851 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 FERMT1Q9BQL6 677 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 ACBD6Q9BR61 282 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 C17orf80Q9BSJ5 609 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 TRIM62Q9BVG3 475 aa9.7□□□□□ -0.86
SS18-220ENST00000582092 KRT82Q9NSB4 513 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms