RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.52■□□□□ 0.88
SS18-209ENST00000578595 TULP2O00295 520 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 THAP12O43422 761 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 GALR2O43603 387 aaPredicted RBP20.51■□□□□ 0.87
SS18-209ENST00000578595 RALAP11233 206 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 RARGP13631 454 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 LCP1P13796 627 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 PTMSP20962 102 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 CDK11BP21127 795 aaKnown RBP20.51■□□□□ 0.87
SS18-209ENST00000578595 GNA15P30679 374 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 CTHP32929 405 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 RGS7P49802 495 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 TUBP50607 506 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 RAPGEF1Q13905 1077 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 ANO6Q4KMQ2 910 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 C10orf120Q5SQS8 335 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 RSRC2Q7L4I2 434 aaKnown RBP20.51■□□□□ 0.87
SS18-209ENST00000578595 RALGPS2Q86X27 583 aaPredicted RBP20.51■□□□□ 0.87
SS18-209ENST00000578595 PRSS33Q8NF86 280 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 ATP2A3Q93084 1043 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 MSANTD3Q96H12 275 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 FAM83CQ9BQN1 747 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 LSM14BQ9BX40 385 aaKnown RBP20.51■□□□□ 0.87
SS18-209ENST00000578595 KCNH6Q9H252 994 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 HPS4Q9NQG7 708 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 NUDT5Q9UKK9 219 aa20.51■□□□□ 0.87
SS18-209ENST00000578595 PIK3R2O00459 728 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 MED7O43513 233 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 OLFM2O95897 454 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 ZDHHC11BP0C7U3 371 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 GLULP15104 373 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 ATP5C1P36542 298 aaKnown RBP20.5■□□□□ 0.87
SS18-209ENST00000578595 PGFP49763 221 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 PTPN5P54829 565 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 GOLGA8FQ08AF8 430 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 GOLGA8DPQ0D2H9 430 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 PON2Q15165 354 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 KRT31Q15323 416 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 FKBP15Q5T1M5 1219 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 SNX30Q5VWJ9 437 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 LCLAT1Q6UWP7 414 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 CCDC186Q7Z3E2 898 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 TADA2BQ86TJ2 420 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 SECISBP2LQ93073 1101 aaKnown RBP20.5■□□□□ 0.87
SS18-209ENST00000578595 ULBP1Q9BZM6 244 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 NMUR1Q9HB89 426 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 RASAL2Q9UJF2 1139 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 DNAJC12Q9UKB3 198 aa20.5■□□□□ 0.87
SS18-209ENST00000578595 H0Y858 1186 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 MDM4O15151 490 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 NFATC1O95644 943 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 TBX18O95935 607 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 ZBED1O96006 694 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 PSEN1P49768 467 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 ZNF132P52740 706 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 NR1H3Q13133 447 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 CNGA2Q16280 664 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 CDKAL1Q5VV42 579 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 C1orf228Q6PIY5 440 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 ARHGAP18Q8N392 663 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 PCMTD1Q96MG8 357 aaPredicted RBP20.49■□□□□ 0.87
SS18-209ENST00000578595 ST7Q9NRC1 585 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 SPATA6Q9NWH7 488 aaPredicted RBP20.49■□□□□ 0.87
SS18-209ENST00000578595 OSER1Q9NX31 292 aa20.49■□□□□ 0.87
SS18-209ENST00000578595 SLC9A3R1O14745 358 aaPredicted RBP20.48■□□□□ 0.87
SS18-209ENST00000578595 TCF3P15923 654 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 PLA2G4AP47712 749 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 NUBP1P53384 320 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 YWHAGP61981 247 aaKnown RBP eCLIP20.48■□□□□ 0.87
SS18-209ENST00000578595 ZXDBP98169 803 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 AMPD2Q01433 879 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 EML3Q32P44 896 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 TXNDC11Q6PKC3 985 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 MIB1Q86YT6 1006 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 CDK5RAP1Q96SZ6 601 aaKnown RBP20.48■□□□□ 0.87
SS18-209ENST00000578595 ZSWIM1Q9BR11 485 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 OSBPL6Q9BZF3 934 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 UBXN6Q9BZV1 441 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 LINC00597Q9H2U6 94 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 ECT2Q9H8V3 914 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 SIX2Q9NPC8 291 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 CYLDQ9NQC7 956 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.48■□□□□ 0.87
SS18-209ENST00000578595 AJAP1Q9UKB5 411 aaPredicted RBP20.48■□□□□ 0.87
SS18-209ENST00000578595 USP3Q9Y6I4 520 aa20.48■□□□□ 0.87
SS18-209ENST00000578595 SYCE3A1L190 88 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 PNMA6AP0CW24 399 aaPredicted RBP20.47■□□□□ 0.87
SS18-209ENST00000578595 EFEMP1Q12805 493 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 LRRC32Q14392 662 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 KLHL40Q2TBA0 621 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 RAB41Q5JT25 222 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 BTBD8Q5XKL5 378 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 SCD5Q86SK9 330 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 NDRG1Q92597 394 aaKnown RBP20.47■□□□□ 0.87
SS18-209ENST00000578595 GOLGA1Q92805 767 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 ATOH1Q92858 354 aaPredicted RBP20.47■□□□□ 0.87
SS18-209ENST00000578595 FAM122AQ96E09 287 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 LMAN1LQ9HAT1 526 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 ACP6Q9NPH0 428 aa20.47■□□□□ 0.87
SS18-209ENST00000578595 DNMT3LQ9UJW3 386 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms