RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CACNA2D1P54289 1103 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 STX17P56962 302 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 MCCD1P59942 119 aaPredicted RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 USP46P62068 366 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CUL2Q13617 745 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 PPP2R5DQ14738 602 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 TPD52L1Q16890 204 aaPredicted RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 ITPRIPL2Q3MIP1 535 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CBWD6Q4V339 395 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CBWD3Q5JTY5 395 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CBWD5Q5RIA9 395 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 TTI2Q6NXR4 508 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 ZC3H14Q6PJT7 736 aaKnown RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 DDX42Q86XP3 938 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS53-214ENST00000572607 C1orf210Q8IVY1 113 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 FUKQ8N0W3 1084 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CPA6Q8N4T0 437 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 ARL14EPQ8N8R7 260 aaPredicted RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 OVCA2Q8WZ82 227 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 SLC35C1Q96A29 364 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 JAKMIP2Q96AA8 810 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CYFIP2Q96F07 1278 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 ZFYVE19Q96K21 471 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 HEXIM2Q96MH2 286 aaKnown RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 CYP2S1Q96SQ9 504 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 KCNK16Q96T55 309 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 USB1Q9BQ65 265 aaKnown RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 FBXO44Q9H4M3 255 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 GKN1Q9NS71 199 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CISHQ9NSE2 258 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 DUS2Q9NX74 493 aaKnown RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 GTSE1Q9NYZ3 720 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 HMGXB4Q9UGU5 601 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 ARHGAP26Q9UNA1 814 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CCL26Q9Y258 94 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 TPRP12270 2363 aaKnown RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 NCANO14594 1321 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 MIA3Q5JRA6 1907 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 C2orf78A6NCI8 922 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 P4HA2O15460 535 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 LRRN2O75325 713 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 NFATC1O95644 943 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 MBL2P11226 248 aaPredicted RBP8.56□□□□□ -1.04
VPS53-214ENST00000572607 BMP6P22004 513 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 CTHP32929 405 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 RPS9P46781 194 aaKnown RBP8.56□□□□□ -1.04
VPS53-214ENST00000572607 SOX9P48436 509 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 FMO5P49326 533 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 MAP3K7CLP57077 242 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 LRMPQ12912 555 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 USP4Q13107 963 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 NR1H3Q13133 447 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 RUNX3Q13761 415 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 ZNF394Q53GI3 561 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 DGKKQ5KSL6 1271 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 HECTD3Q5T447 861 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 CREBRFQ8IUR6 639 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 C12orf29Q8N999 325 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 SH3RF2Q8TEC5 729 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 OSCP1Q8WVF1 389 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 SEMA4DQ92854 862 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 ATP2A3Q93084 1043 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 CLDN23Q96B33 292 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 TMEM176AQ96HP8 235 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 NT5C1BQ96P26 610 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 LRRC3BQ96PB8 259 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 TWNKQ96RR1 684 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 HNRNPABQ99729 332 aaKnown RBP8.56□□□□□ -1.04
VPS53-214ENST00000572607 DUSP9Q99956 384 aaKnown RBP8.56□□□□□ -1.04
VPS53-214ENST00000572607 NUP62CLQ9H1M0 184 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 CLSTN2Q9H4D0 955 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 EBF3Q9H4W6 596 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 LMAN1LQ9HAT1 526 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 TLR8Q9NR97 1041 aaKnown RBP8.56□□□□□ -1.04
VPS53-214ENST00000572607 GCNT4Q9P109 453 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 DLGAP2Q9P1A6 1054 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 RWDD2AQ9UIY3 292 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 COQ4Q9Y3A0 265 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 MTF2Q9Y483 593 aaPredicted RBP8.56□□□□□ -1.04
VPS53-214ENST00000572607 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS53-214ENST00000572607 CPQQ9Y646 472 aa8.56□□□□□ -1.04
VPS53-214ENST00000572607 SPTBN2O15020 2390 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 LEFTY2O00292 366 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SLC9A3R1O14745 358 aaPredicted RBP8.55□□□□□ -1.04
VPS53-214ENST00000572607 PMM2O15305 246 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 KRT37O76014 449 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 DXOO77932 396 aaKnown RBP8.55□□□□□ -1.04
VPS53-214ENST00000572607 AFPP02771 609 aaKnown RBP8.55□□□□□ -1.04
VPS53-214ENST00000572607 CD19P15391 556 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 TCF3P15923 654 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 TUBP50607 506 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 CCR3P51677 355 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SLC7A9P82251 487 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 TNK2Q07912 1038 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 GOLGA8FQ08AF8 430 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 GOLGA8DPQ0D2H9 430 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 GRSF1Q12849 480 aaKnown RBP eCLIP8.55□□□□□ -1.04
VPS53-214ENST00000572607 ZNF77Q15935 545 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 ARHGAP17Q68EM7 881 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 TRIM68Q6AZZ1 485 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms