RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 PDCL2Q8N4E4 241 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 ZNF248Q8NDW4 579 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 IGSF8Q969P0 613 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 MED8Q96G25 268 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 SPATA17Q96L03 361 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 ASB7Q9H672 318 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 ZSWIM6Q9HCJ5 1215 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 DNAJC17Q9NVM6 304 aaKnown RBP13.94□□□□□ -0.18
CCDC40-208ENST00000572270 USP36Q9P275 1121 aaKnown RBP13.94□□□□□ -0.18
CCDC40-208ENST00000572270 LRWD1Q9UFC0 647 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 IL17BQ9UHF5 180 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 CPSF3Q9UKF6 684 aaKnown RBP13.94□□□□□ -0.18
CCDC40-208ENST00000572270 HCN2Q9UL51 889 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 SH3BP1Q9Y3L3 701 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 HEMK1Q9Y5R4 338 aaPredicted RBP13.94□□□□□ -0.18
CCDC40-208ENST00000572270 SNX11Q9Y5W9 270 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 MYLKQ15746 1914 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 ZNF840PA6NDX5 716 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 GFRA2O00451 464 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 HUS1O60921 280 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 OLFM2O95897 454 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 C1SP09871 688 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 GUCY2CP25092 1073 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 GRIK1P39086 918 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 MAGEA11P43364 429 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 RAD51AP2Q09MP3 1159 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 TRIM29Q14134 588 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 TBC1D25Q3MII6 688 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 COLEC12Q5KU26 742 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 C1orf186Q6ZWK4 172 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 TMEM86AQ8N2M4 240 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 CEP295NLQ96MC4 621 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 ITM2CQ9NQX7 267 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 SPHK2Q9NRA0 654 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 ANKRD6Q9Y2G4 727 aa13.93□□□□□ -0.18
CCDC40-208ENST00000572270 TRIM24O15164 1050 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 OAS1P00973 400 aaKnown RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 ACADMP11310 421 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 PCSK1P29120 753 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 CDC25AP30304 524 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 ADSSP30520 456 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 FXR2P51116 673 aaKnown RBP eCLIP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 IL9RQ01113 521 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 ORC2Q13416 577 aaPredicted RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 USP49Q70CQ1 688 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 ERICH1Q86X53 443 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 NAF1Q96HR8 494 aaKnown RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 CNDP2Q96KP4 475 aaKnown RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 ZFRQ96KR1 1074 aaKnown RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 XPO6Q96QU8 1125 aaKnown RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 PKMYT1Q99640 499 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 NUP58Q9BVL2 599 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 RAB34Q9BZG1 259 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 CPNE5Q9HCH3 593 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 MAGEC2Q9UBF1 373 aaPredicted RBP13.92□□□□□ -0.18
CCDC40-208ENST00000572270 L1RE1Q9UN81 338 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 CABIN1Q9Y6J0 2220 aa13.92□□□□□ -0.18
CCDC40-208ENST00000572270 A0A0B4J269 797 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 KCNJ18B7U540 433 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 LAD1O00515 517 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 LDOC1O95751 146 aaPredicted RBP13.91□□□□□ -0.18
CCDC40-208ENST00000572270 GRIA4P48058 902 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 TPMTP51580 245 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 FOSBP53539 338 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 PCBP4P57723 403 aaKnown RBP13.91□□□□□ -0.18
CCDC40-208ENST00000572270 USP46P62068 366 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 ZNF174Q15697 407 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 CCDC142Q17RM4 750 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 FUT11Q495W5 492 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 VSTM1Q6UX27 236 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 ADAT2Q7Z6V5 191 aaKnown RBP13.91□□□□□ -0.18
CCDC40-208ENST00000572270 C1orf216Q8TAB5 229 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 SLITRK1Q96PX8 696 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 TTLL2Q9BWV7 592 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 TRIM4Q9C037 500 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 FAM117AQ9C073 453 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 PCED1AQ9H1Q7 454 aa13.91□□□□□ -0.18
CCDC40-208ENST00000572270 LARSQ9P2J5 1176 aaKnown RBP13.91□□□□□ -0.18
CCDC40-208ENST00000572270 H0Y8X5 98 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 KCNK3O14649 394 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 TRIM66O15016 1216 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 DFNA5O60443 496 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 BDNFP23560 247 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 LHX1P48742 406 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 ACOT2P49753 483 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 NCKAP1LP55160 1127 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 ORC1Q13415 861 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 KRT79Q5XKE5 535 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 TMEM25Q86YD3 366 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 BBS7Q8IWZ6 715 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 TTC9Q92623 222 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 PRCCQ92733 491 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-208ENST00000572270 SIPA1Q96FS4 1042 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 PDRG1Q9NUG6 133 aa13.9□□□□□ -0.18
CCDC40-208ENST00000572270 TP53BP1Q12888 1972 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-208ENST00000572270 WASH3PC4AMC7 463 aa13.89□□□□□ -0.19
CCDC40-208ENST00000572270 PRRT4C9JH25 899 aa13.89□□□□□ -0.19
CCDC40-208ENST00000572270 NEDD8-MDP1E9PL57 170 aa13.89□□□□□ -0.19
CCDC40-208ENST00000572270 TULP1O00294 542 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-208ENST00000572270 PAPSS1O43252 624 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms