RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CEP192Q8TEP8 1941 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 PLXND1Q9Y4D7 1925 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 PTPRBP23467 1997 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 ZNF462Q96JM2 2506 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 NPHP3-ACAD11A0A0J9YXS1 232 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 TRIM66O15016 1216 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 JAK2O60674 1132 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 PIGRP01833 764 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 ITGB3P05106 788 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 PLA2G4BP0C869 781 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 ACADMP11310 421 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 TRAPPC10P48553 1259 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 CXADRP78310 365 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 KCNK18Q7Z418 384 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 CSGALNACT2Q8N6G5 542 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 BAHD1Q8TBE0 780 aaPredicted RBP11.8□□□□□ -0.52
VPS53-207ENST00000570510 POMGNT1Q8WZA1 660 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 ACOX2Q99424 681 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 SPHK2Q9NRA0 654 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 FTSJ1Q9UET6 329 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 STARD13Q9Y3M8 1113 aa11.8□□□□□ -0.52
VPS53-207ENST00000570510 TSC2P49815 1807 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 OBSL1O75147 1896 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 A0A1B0GVT2 93 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 ERVH48-1M5A8F1 160 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 LAD1O00515 517 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 HOXC11O43248 304 aaPredicted RBP11.79□□□□□ -0.52
VPS53-207ENST00000570510 TRAK2O60296 914 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 DKK1O94907 266 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 PLCG1P19174 1290 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 OXTRP30559 389 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 CSNK1EP49674 416 aaKnown RBP11.79□□□□□ -0.52
VPS53-207ENST00000570510 AFF3P51826 1226 aaKnown RBP11.79□□□□□ -0.52
VPS53-207ENST00000570510 USP46P62068 366 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 TAF10Q12962 218 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 MYO1EQ12965 1108 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 DHX8Q14562 1220 aaKnown RBP11.79□□□□□ -0.52
VPS53-207ENST00000570510 HS2ST1Q7LGA3 356 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 MIB1Q86YT6 1006 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 PHTF2Q8N3S3 785 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 KCTD17Q8N5Z5 321 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 TOP6BLQ8N6T0 577 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 MYLPFQ96A32 169 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 SYT15Q9BQS2 421 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 BACH2Q9BYV9 841 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 PARVGQ9HBI0 331 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 CD93Q9NPY3 652 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 WSB2Q9NYS7 404 aaPredicted RBP11.79□□□□□ -0.52
VPS53-207ENST00000570510 ODF2LQ9ULJ1 636 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 BTBD3Q9Y2F9 522 aa11.79□□□□□ -0.52
VPS53-207ENST00000570510 TENM4Q6N022 2769 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 METTL12A8MUP2 240 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 NEDD8-MDP1E9PL57 170 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 SYNCRIPO60506 623 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 TBCAO75347 108 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 OAS1P00973 400 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 IRF1P10914 325 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 CHRM1P11229 460 aaPredicted RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 PDIA4P13667 645 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 CCT8P50990 548 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 PSMC1P62191 440 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 RBP5P82980 135 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 POSTNQ15063 836 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 CCDC142Q17RM4 750 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 DBX2Q6ZNG2 339 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 ADAT2Q7Z6V5 191 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 TMEM25Q86YD3 366 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 ETFBKMTQ8IXQ9 262 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 LRRC52Q8N7C0 313 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 C4orf32Q8N8J7 132 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 NOC3LQ8WTT2 800 aaKnown RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 PRCCQ92733 491 aaPredicted RBP11.78□□□□□ -0.52
VPS53-207ENST00000570510 FGF11Q92914 225 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 PKMYT1Q99640 499 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 GABRG3Q99928 467 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 NUP58Q9BVL2 599 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 BBS2Q9BXC9 721 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 CDH9Q9ULB4 789 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 TCHHQ07283 1943 aa11.78□□□□□ -0.52
VPS53-207ENST00000570510 SCN1AP35498 2009 aa11.77□□□□□ -0.52
VPS53-207ENST00000570510 ANK1P16157 1881 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 ANKRD63C9JTQ0 380 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 F8VP50 259 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 GFRA2O00451 464 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 TRIM24O15164 1050 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 HCRTO43612 131 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 TLX3O43711 291 aaPredicted RBP11.77□□□□□ -0.53
VPS53-207ENST00000570510 ATP2C2O75185 946 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 PDGFRBP09619 1106 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 ATXN8OSP0DMR3 200 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 CDK4P11802 303 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 ACTN2P35609 894 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 SLC12A3P55017 1021 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 NOP14P78316 857 aaKnown RBP11.77□□□□□ -0.53
VPS53-207ENST00000570510 POU5F1Q01860 360 aaKnown RBP11.77□□□□□ -0.53
VPS53-207ENST00000570510 CCDC173Q0VFZ6 552 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 HECTD3Q5T447 861 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 BROXQ5VW32 411 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 SLC39A4Q6P5W5 647 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 FAM171BQ6P995 826 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms