RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TTLL2Q9BWV7 592 aa19.3■□□□□ 0.68
CLK3-227ENST00000570296 SEMA4CQ9C0C4 833 aa19.3■□□□□ 0.68
CLK3-227ENST00000570296 L1RE1Q9UN81 338 aa19.3■□□□□ 0.68
CLK3-227ENST00000570296 SPTAN1Q13813 2472 aaKnown RBP19.3■□□□□ 0.68
CLK3-227ENST00000570296 SLC28A2O43868 658 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 HUS1O60921 280 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 SCP2P22307 547 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 OXTRP30559 389 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 CCT8P50990 548 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 ZNF174Q15697 407 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 KIF19Q2TAC6 998 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 GRAMD4Q6IC98 578 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 VSTM1Q6UX27 236 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 C4orf50Q6ZRC1 276 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 ERLEC1Q96DZ1 483 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 DUSP9Q99956 384 aaKnown RBP19.29■□□□□ 0.68
CLK3-227ENST00000570296 ITM2CQ9NQX7 267 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 PDRG1Q9NUG6 133 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 EIF2B4Q9UI10 523 aaKnown RBP19.29■□□□□ 0.68
CLK3-227ENST00000570296 RAD54BQ9Y620 910 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 FLNCQ14315 2725 aa19.29■□□□□ 0.68
CLK3-227ENST00000570296 C1SP09871 688 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 PCSK1P29120 753 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 ACTN2P35609 894 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 CSNK1EP49674 416 aaKnown RBP19.28■□□□□ 0.68
CLK3-227ENST00000570296 USP46P62068 366 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 CCDC173Q0VFZ6 552 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 TRIM29Q14134 588 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 CCDC142Q17RM4 750 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 IGSF8Q969P0 613 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 ARID3AQ99856 593 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 RAB34Q9BZG1 259 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 PCED1AQ9H1Q7 454 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 SPHK2Q9NRA0 654 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 LARSQ9P2J5 1176 aaKnown RBP19.28■□□□□ 0.68
CLK3-227ENST00000570296 SNX11Q9Y5W9 270 aa19.28■□□□□ 0.68
CLK3-227ENST00000570296 TRIM24O15164 1050 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 PAPSS1O43252 624 aaPredicted RBP19.27■□□□□ 0.68
CLK3-227ENST00000570296 MBL2P11226 248 aaPredicted RBP19.27■□□□□ 0.68
CLK3-227ENST00000570296 UCNP55089 124 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 RAD51AP2Q09MP3 1159 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 KCNH2Q12809 1159 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 TARDBPQ13148 414 aaKnown RBP eCLIP19.27■□□□□ 0.684e-10■■■□□ 17.9
CLK3-227ENST00000570296 ANO4Q32M45 955 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 FAM171BQ6P995 826 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 IGSF22Q8N9C0 903 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 SCFD1Q8WVM8 642 aa19.27■□□□□ 0.68
CLK3-227ENST00000570296 LRRK2Q5S007 2527 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 MYH10P35580 1976 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 BRINP1O60477 761 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 RFPL3O75679 317 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 REC8O95072 547 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 IGLV3-19P01714 112 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 ANXA13P27216 316 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 LHX1P48742 406 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 TMPRSS3P57727 454 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 NOP14P78316 857 aaKnown RBP19.26■□□□□ 0.67
CLK3-227ENST00000570296 POU5F1Q01860 360 aaKnown RBP19.26■□□□□ 0.67
CLK3-227ENST00000570296 TEAD4Q15561 434 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 KRT79Q5XKE5 535 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 KCNK18Q7Z418 384 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 ERICH1Q86X53 443 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 NT5DC4Q86YG4 428 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 OSGEPQ9NPF4 335 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 DNAJC17Q9NVM6 304 aaKnown RBP19.26■□□□□ 0.67
CLK3-227ENST00000570296 KCND2Q9NZV8 630 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 MAGEC2Q9UBF1 373 aaPredicted RBP19.26■□□□□ 0.67
CLK3-227ENST00000570296 ANKRD6Q9Y2G4 727 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 AHCTF1Q8WYP5 2266 aa19.26■□□□□ 0.67
CLK3-227ENST00000570296 KCNJ18B7U540 433 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 ABL1P00519 1130 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 GRIK1P39086 918 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 ACOT2P49753 483 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 TPMTP51580 245 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 LY6DQ14210 128 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 STARD3Q14849 445 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 TBC1D25Q3MII6 688 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 OSTM1Q86WC4 334 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 TMEM25Q86YD3 366 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 LGMNQ99538 433 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 NUP58Q9BVL2 599 aa19.25■□□□□ 0.67
CLK3-227ENST00000570296 TP53BP1Q12888 1972 aaPredicted RBP19.24■□□□□ 0.67
CLK3-227ENST00000570296 PRRT4C9JH25 899 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 ENC1O14682 589 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 GABRDO14764 452 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 TRIM66O15016 1216 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 CACNG3O60359 315 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 GRIA4P48058 902 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 ZNF132P52740 706 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 CLDN6P56747 220 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 FUT11Q495W5 492 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 HES3Q5TGS1 186 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 BROXQ5VW32 411 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 SLC39A4Q6P5W5 647 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 TOP6BLQ8N6T0 577 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 C4orf32Q8N8J7 132 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 MED8Q96G25 268 aa19.24■□□□□ 0.67
CLK3-227ENST00000570296 ZFRQ96KR1 1074 aaKnown RBP19.24■□□□□ 0.67
CLK3-227ENST00000570296 XPO6Q96QU8 1125 aaKnown RBP19.24■□□□□ 0.67
CLK3-227ENST00000570296 GDAP2Q9NXN4 497 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms