RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 DPEP3Q9H4B8 488 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 GOLGA2P5Q9HBQ8 144 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 PIH1D1Q9NWS0 290 aaKnown RBP9.13□□□□□ -0.95
LINC00558-201ENST00000569422 PSMC3IPQ9P2W1 217 aaPredicted RBP9.13□□□□□ -0.95
LINC00558-201ENST00000569422 RABL2BQ9UNT1 228 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 SHOC2Q9UQ13 582 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 ARL2BPQ9Y2Y0 163 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 IKBKGQ9Y6K9 419 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 A8MXQ7 604 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 APOC4-APOC2K7ER74 178 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 PDHXO00330 501 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 APOC2P02655 101 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 APRTP07741 180 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 RBL1P28749 1068 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 PHBP35232 272 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 ELF3P78545 371 aaPredicted RBP9.13□□□□□ -0.95
LINC00558-201ENST00000569422 PPIL2Q13356 520 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 MOGSQ13724 837 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 GRIK4Q16099 956 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 CCDC142Q17RM4 750 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 ZNF484Q5JVG2 852 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 VSIG1Q86XK7 387 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 NAT8LQ8N9F0 302 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 ATP11CQ8NB49 1132 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 TTC13Q8NBP0 860 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 CCDC110Q8TBZ0 833 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.13□□□□□ -0.95
LINC00558-201ENST00000569422 WDR35Q9P2L0 1181 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 RABGEF1Q9UJ41 708 aa9.13□□□□□ -0.95
LINC00558-201ENST00000569422 KBTBD13C9JR72 458 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 DYNC1LI2O43237 492 aaPredicted RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 TCEA3O75764 348 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CCDC130P13994 396 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 EPHX2P34913 555 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ZNF143P52747 638 aaPredicted RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 BCAR1P56945 870 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CCDC14Q49A88 953 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 BSPRYQ5W0U4 402 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ECHDC2Q86YB7 292 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ERP27Q96DN0 273 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 MCRS1Q96EZ8 462 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 DHX35Q9H5Z1 703 aaKnown RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 NPHS2Q9NP85 383 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 SLC17A7Q9P2U7 560 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 HESX1Q9UBX0 185 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 FARP1Q9Y4F1 1045 aaPredicted RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 MAD1L1Q9Y6D9 718 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 PARP14Q460N5 1801 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 WDR81Q562E7 1941 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ASMTLO95671 621 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 TARSP26639 723 aaKnown RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 SDC4P31431 198 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 RABGGTBP53611 331 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 NCALDP61601 193 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 SNAPC2Q13487 334 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 KBTBD12Q3ZCT8 623 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ZNF618Q5T7W0 954 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 DPY19L2Q6NUT2 758 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 PCGF5Q86SE9 256 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 PPM1NQ8N819 430 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 OR6J1Q8NGC5 347 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 TCP10LQ8TDR4 215 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 TTC17Q96AE7 1141 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 TMEM237Q96Q45 408 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 C16orf70Q9BSU1 422 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CNPY3Q9BT09 278 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 NXF3Q9H4D5 531 aaKnown RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ASB7Q9H672 318 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 RSAD1Q9HA92 442 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 UBN1Q9NPG3 1134 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CACNG4Q9UBN1 327 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 SLC12A4Q9UP95 1085 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 L3MBTL1Q9Y468 752 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 LCTP09848 1927 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 C2CD4BA6NLJ0 364 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 MAGEB2O15479 319 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ZBED1O96006 694 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ABHD2P08910 425 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 GHRP10912 638 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 FGFR1P11362 822 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 SMPD1P17405 629 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 MTFR1Q15390 333 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CEP128Q6ZU80 1094 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 FAM228AQ86W67 206 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CMASQ8NFW8 434 aaPredicted RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 FAM149B1Q96BN6 582 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 LBHD1Q9BQE6 289 aaPredicted RBP9.12□□□□□ -0.95
LINC00558-201ENST00000569422 CEP41Q9BYV8 373 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 FOXP3Q9BZS1 431 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 ETNK1Q9HBU6 452 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 EURLQ9NYK6 297 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 KCNH4Q9UQ05 1017 aa9.12□□□□□ -0.95
LINC00558-201ENST00000569422 EVPLQ92817 2033 aa9.11□□□□□ -0.95
LINC00558-201ENST00000569422 MCM3APO60318 1980 aa9.11□□□□□ -0.95
LINC00558-201ENST00000569422 RGPD3A6NKT7 1758 aaPredicted RBP9.11□□□□□ -0.95
LINC00558-201ENST00000569422 RGPD4Q7Z3J3 1758 aa9.11□□□□□ -0.95
LINC00558-201ENST00000569422 CCL15-CCL14A0A0B4J2E2 113 aa9.11□□□□□ -0.95
LINC00558-201ENST00000569422 MT-ND3P03897 115 aa9.11□□□□□ -0.95
LINC00558-201ENST00000569422 PFKMP08237 780 aa9.11□□□□□ -0.95
LINC00558-201ENST00000569422 RPSAP08865 295 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms