RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 WDR78Q5VTH9 848 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 SYT13Q7L8C5 426 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 NRSN1Q8IZ57 195 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 CEP70Q8NHQ1 597 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 GOLGA1Q92805 767 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 GLG1Q92896 1179 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 MAELQ96JY0 434 aaKnown RBP6.6□□□□□ -1.35
UBR1-208ENST00000569066 PPM1MQ96MI6 270 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 CNTN6Q9UQ52 1028 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 DRG1Q9Y295 367 aaKnown RBP6.6□□□□□ -1.35
UBR1-208ENST00000569066 NEU2Q9Y3R4 380 aa6.6□□□□□ -1.35
UBR1-208ENST00000569066 DBX1A6NMT0 343 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 VWC2LB2RUY7 222 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 SOAT2O75908 522 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 FESP07332 822 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 DRD1P21728 446 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 MAPRE1Q15691 268 aaKnown RBP6.59□□□□□ -1.35
UBR1-208ENST00000569066 INTS11Q5TA45 600 aaKnown RBP6.59□□□□□ -1.35
UBR1-208ENST00000569066 PPHLN1Q8NEY8 458 aaKnown RBP6.59□□□□□ -1.35
UBR1-208ENST00000569066 WDYHV1Q96HA8 205 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 SEC62Q99442 399 aaKnown RBP6.59□□□□□ -1.35
UBR1-208ENST00000569066 VN1R3Q9BXE9 311 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 INTS13Q9NVM9 706 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 USP22Q9UPT9 525 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 PCDHB7Q9Y5E2 793 aa6.59□□□□□ -1.35
UBR1-208ENST00000569066 CYP27B1O15528 508 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 CDKL5O76039 1030 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 SPDEFO95238 335 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 SLC25A3Q00325 362 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 DDX10Q13206 875 aaKnown RBP6.59□□□□□ -1.36
UBR1-208ENST00000569066 RPS6KA2Q15349 733 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 DLGAP5Q15398 846 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 ATPAF1Q5TC12 328 aaPredicted RBP6.59□□□□□ -1.36
UBR1-208ENST00000569066 GRHL2Q6ISB3 625 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 FAM180BQ6P0A1 224 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 NFRKBQ6P4R8 1299 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 HTRA1Q92743 480 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 OSBPL9Q96SU4 736 aa6.59□□□□□ -1.36
UBR1-208ENST00000569066 TRGV11A0A075B6L2 103 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 PRKCBP05771 671 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 FZD5Q13467 585 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 SLC12A1Q13621 1099 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 SYNE3Q6ZMZ3 975 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 SSH3Q8TE77 659 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 HMGB4Q8WW32 186 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 R3HDM4Q96D70 268 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 INO80BQ9C086 356 aaPredicted RBP6.58□□□□□ -1.36
UBR1-208ENST00000569066 PARD6AQ9NPB6 346 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 NOX1Q9Y5S8 564 aa6.58□□□□□ -1.36
UBR1-208ENST00000569066 A0A0G2JLL6 359 aaPredicted RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 M0QZQ0 153 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 SNX2O60749 519 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 BDNFP23560 247 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 LIPAP38571 399 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 ATXN1P54253 815 aaKnown RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 FAM3BP58499 235 aaPredicted RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 MPP1Q00013 466 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 TRIM60Q495X7 471 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 LRRC24Q50LG9 513 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 SFRP4Q6FHJ7 346 aaPredicted RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 RAB11FIP2Q7L804 512 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 CAND1Q86VP6 1230 aaKnown RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 PALM2Q8IXS6 379 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 SLC22A17Q8WUG5 538 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 EDAQ92838 391 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 ZDHHC12Q96GR4 267 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 ZNF668Q96K58 619 aaPredicted RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 BDH2Q9BUT1 245 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 COL15A1P39059 1388 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 A1L4Q6 167 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 A6NLC8 198 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 TK1P04183 234 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 DDX6P26196 483 aaKnown RBP eCLIP6.57□□□□□ -1.36
UBR1-208ENST00000569066 EPHA3P29320 983 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 SF3A3Q12874 501 aaKnown RBP eCLIP6.57□□□□□ -1.36
UBR1-208ENST00000569066 TBX2Q13207 712 aaPredicted RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 TP53BP2Q13625 1128 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 RETSATQ6NUM9 610 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 RSRC2Q7L4I2 434 aaKnown RBP6.57□□□□□ -1.36
UBR1-208ENST00000569066 OR6Y1Q8NGX8 325 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 TWSG1Q9GZX9 223 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 KLC2Q9H0B6 622 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 ZHX3Q9H4I2 956 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 RMI1Q9H9A7 625 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 CHODLQ9H9P2 273 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 GALNT9Q9HCQ5 603 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 DKK3Q9UBP4 350 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 RCE1Q9Y256 329 aa6.57□□□□□ -1.36
UBR1-208ENST00000569066 E7EVH7 732 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 STX16-NPEPL1H3BU86 382 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 RNASET2O00584 256 aaKnown RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 STX16O14662 325 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 HOXC11O43248 304 aaPredicted RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 HLA-DOAP06340 250 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 ALADP13716 330 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 SERPINA4P29622 427 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 MTHFSP49914 203 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 PAPOLAP51003 745 aaKnown RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 NR1H2P55055 460 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 MTAPQ13126 283 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms