RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 MPOP05164 745 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 CYP2F1P24903 491 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 TPMTP51580 245 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 ERVPABLB-1P60509 514 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 SLC7A9P82251 487 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 INSM1Q01101 510 aaPredicted RBP12.03□□□□□ -0.48
CDH3-208ENST00000569036 LINC00303Q3SY05 128 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 FUT11Q495W5 492 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 BTBD8Q5XKL5 378 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 KDM7AQ6ZMT4 941 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 NUDT18Q6ZVK8 323 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 KIFAP3Q92845 792 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 LIN37Q96GY3 246 aaPredicted RBP12.03□□□□□ -0.48
CDH3-208ENST00000569036 AIFM3Q96NN9 605 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 TMEM134Q9H6X4 195 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 RPF1Q9H9Y2 349 aaKnown RBP12.03□□□□□ -0.48
CDH3-208ENST00000569036 OSGEPQ9NPF4 335 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 RRAGDQ9NQL2 400 aaPredicted RBP12.03□□□□□ -0.48
CDH3-208ENST00000569036 CFAP97Q9P2B7 532 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 CPQQ9Y646 472 aa12.03□□□□□ -0.48
CDH3-208ENST00000569036 ARID1BQ8NFD5 2236 aaPredicted RBP12.03□□□□□ -0.48
CDH3-208ENST00000569036 CCDC169A6NNP5 214 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 WASH3PC4AMC7 463 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 XPOTO43592 962 aaKnown RBP12.02□□□□□ -0.49
CDH3-208ENST00000569036 MED24O75448 989 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 IGLV3-19P01714 112 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 PFKLP17858 780 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 POU3F2P20265 443 aaPredicted RBP12.02□□□□□ -0.49
CDH3-208ENST00000569036 PAX3P23760 479 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 OXTRP30559 389 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 GRIK1P39086 918 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 NPTX2P47972 431 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 GABREP78334 506 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 ILKQ13418 452 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 HS1BP3Q53T59 392 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 C9orf57Q5W0N0 161 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 WSCD1Q658N2 575 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 PIK3AP1Q6ZUJ8 805 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 CATSPER3Q86XQ3 398 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 LEO1Q8WVC0 666 aaPredicted RBP12.02□□□□□ -0.49
CDH3-208ENST00000569036 BRF1Q92994 677 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 VCPIP1Q96JH7 1222 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 MKRN2Q9H000 416 aaKnown RBP12.02□□□□□ -0.49
CDH3-208ENST00000569036 RNF38Q9H0F5 515 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 PCED1AQ9H1Q7 454 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 GRPEL1Q9HAV7 217 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 NCOA5Q9HCD5 579 aaKnown RBP12.02□□□□□ -0.49
CDH3-208ENST00000569036 ABCB6Q9NP58 842 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 ASCL3Q9NQ33 180 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 ARHGAP28Q9P2N2 729 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 KCNJ14Q9UNX9 436 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 PCDHB6Q9Y5E3 794 aa12.02□□□□□ -0.49
CDH3-208ENST00000569036 MYH10P35580 1976 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 LACTBL1A8MY62 500 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 GOLGA6L22H0YM25 854 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 CYB561D2O14569 222 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 DFNA5O60443 496 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 TOM1L1O75674 476 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 OLFM2O95897 454 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 HSP90AA1P07900 732 aaKnown RBP12.01□□□□□ -0.49
CDH3-208ENST00000569036 CLTAP09496 248 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 PEX3P56589 373 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 TSPY1Q01534 308 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 PPP2R3AQ06190 1150 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 CALCRLQ16602 461 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 NFE2Q16621 373 aaPredicted RBP12.01□□□□□ -0.49
CDH3-208ENST00000569036 RNF20Q5VTR2 975 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 SPATA1Q5VX52 437 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 GRAMD4Q6IC98 578 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 CCDC81Q6ZN84 652 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 Q6ZUG5 572 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 TRIM22Q8IYM9 498 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 LSMEM2Q8N112 164 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 FAM177A1Q8N128 213 aaPredicted RBP12.01□□□□□ -0.49
CDH3-208ENST00000569036 FAM26EQ8N5C1 309 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 EID2Q8N6I1 236 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 KRI1Q8N9T8 703 aaKnown RBP12.01□□□□□ -0.49
CDH3-208ENST00000569036 PYM1Q9BRP8 204 aaKnown RBP12.01□□□□□ -0.49
CDH3-208ENST00000569036 NUP58Q9BVL2 599 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 TUFT1Q9NNX1 390 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 TBC1D14Q9P2M4 693 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 CELSR2Q9HCU4 2923 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 CRYBG3Q68DQ2 2970 aa12.01□□□□□ -0.49
CDH3-208ENST00000569036 PLXNA2O75051 1894 aa12□□□□□ -0.49
CDH3-208ENST00000569036 CKAP5Q14008 2032 aa12□□□□□ -0.49
CDH3-208ENST00000569036 PRRT4C9JH25 899 aa12□□□□□ -0.49
CDH3-208ENST00000569036 GFRA2O00451 464 aa12□□□□□ -0.49
CDH3-208ENST00000569036 PIRO00625 290 aa12□□□□□ -0.49
CDH3-208ENST00000569036 MT-CO3P00414 261 aa12□□□□□ -0.49
CDH3-208ENST00000569036 ITGAVP06756 1048 aa12□□□□□ -0.49
CDH3-208ENST00000569036 CPA1P15085 419 aa12□□□□□ -0.49
CDH3-208ENST00000569036 TXKP42681 527 aa12□□□□□ -0.49
CDH3-208ENST00000569036 ORC1Q13415 861 aa12□□□□□ -0.49
CDH3-208ENST00000569036 BMP2KLQ5H9B9 411 aa12□□□□□ -0.49
CDH3-208ENST00000569036 EARS2Q5JPH6 523 aaKnown RBP12□□□□□ -0.49
CDH3-208ENST00000569036 PRAMEF14Q5SWL7 426 aa12□□□□□ -0.49
CDH3-208ENST00000569036 XKR5Q6UX68 686 aa12□□□□□ -0.49
CDH3-208ENST00000569036 RASEFQ8IZ41 740 aa12□□□□□ -0.49
CDH3-208ENST00000569036 SAP25Q8TEE9 199 aa12□□□□□ -0.49
CDH3-208ENST00000569036 C6orf106Q9H6K1 298 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms