RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SLC4A11Q8NBS3 891 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 NELFBQ8WX92 580 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 ZFRQ96KR1 1074 aaKnown RBP21.88■■□□□ 1.09
CLN3-219ENST00000565778 CEP63Q96MT8 703 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 PNPLA8Q9NP80 782 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 PPP1R3GB7ZBB8 358 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 ATP5C1P36542 298 aaKnown RBP21.87■■□□□ 1.09
CLN3-219ENST00000565778 OPRD1P41143 372 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 RAD23BP54727 409 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 LRMPQ12912 555 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 SRSF5Q13243 272 aaKnown RBP21.87■■□□□ 1.09
CLN3-219ENST00000565778 CCDC26Q8TAB7 109 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 EZH1Q92800 747 aaPredicted RBP21.87■■□□□ 1.09
CLN3-219ENST00000565778 SLC35C1Q96A29 364 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 DUSP9Q99956 384 aaKnown RBP21.87■■□□□ 1.09
CLN3-219ENST00000565778 FAM124BQ9H5Z6 455 aaPredicted RBP21.87■■□□□ 1.09
CLN3-219ENST00000565778 POLR3BQ9NW08 1133 aaPredicted RBP21.87■■□□□ 1.09
CLN3-219ENST00000565778 GMEB2Q9UKD1 530 aa21.87■■□□□ 1.09
CLN3-219ENST00000565778 BICDL2A1A5D9 508 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 CYP26A1O43174 497 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 ADH1CP00326 375 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 BMP6P22004 513 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 ID4P47928 161 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 SLC6A11P48066 632 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 KIF11P52732 1056 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 CUL2Q13617 745 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 MORC3Q14149 939 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 CEP68Q76N32 757 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 WDR5BQ86VZ2 330 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 OTUB2Q96DC9 234 aa21.86■■□□□ 1.09
CLN3-219ENST00000565778 A0A1W2PQH9 124 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 ADH5P11766 374 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 RARGP13631 454 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 FMO5P49326 533 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 SEC13P55735 322 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 SLC8A3P57103 927 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 YWHAEP62258 255 aaKnown RBP21.85■■□□□ 1.09
CLN3-219ENST00000565778 GAB4Q2WGN9 574 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 LY6G5CQ5SRR4 150 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 TTI2Q6NXR4 508 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 CAMKK1Q8N5S9 505 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 GPR161Q8N6U8 529 aaKnown RBP21.85■■□□□ 1.09
CLN3-219ENST00000565778 PNKPQ96T60 521 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 KLF16Q9BXK1 252 aaPredicted RBP21.85■■□□□ 1.09
CLN3-219ENST00000565778 NMUR1Q9HB89 426 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 CYLDQ9NQC7 956 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 OSER1Q9NX31 292 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 NAGPAQ9UK23 515 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 NUDT5Q9UKK9 219 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 CTNND2Q9UQB3 1225 aa21.85■■□□□ 1.09
CLN3-219ENST00000565778 K7EQS6 105 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 STX17P56962 302 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 GAD2Q05329 585 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 GOLGA8FQ08AF8 430 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 GOLGA8DPQ0D2H9 430 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 C2orf27AQ580R0 203 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 BTBD8Q5XKL5 378 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 ARHGAP17Q68EM7 881 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 LAIR1Q6GTX8 287 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 SYT13Q7L8C5 426 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 BBS7Q8IWZ6 715 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 ANKRD52Q8NB46 1076 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 WBP2Q969T9 261 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 ACDQ96AP0 544 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 UBXN6Q9BZV1 441 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 CHMP5Q9NZZ3 219 aa21.84■■□□□ 1.09
CLN3-219ENST00000565778 WDR87Q6ZQQ6 2873 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 HELZP42694 1942 aaKnown RBP21.83■■□□□ 1.09
CLN3-219ENST00000565778 CCDC163A0A0D9SF12 145 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 APODP05090 189 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 RALAP11233 206 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 CD19P15391 556 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 TBXAS1P24557 533 aaPredicted RBP21.83■■□□□ 1.09
CLN3-219ENST00000565778 PLA2G4AP47712 749 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 PSEN1P49768 467 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 CETN1Q12798 172 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 DMC1Q14565 340 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 ANO4Q32M45 955 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 C10orf120Q5SQS8 335 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 HTR3DQ70Z44 454 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 CCDC186Q7Z3E2 898 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 NAT16Q8N8M0 369 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 HHIPQ96QV1 700 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.83■■□□□ 1.09
CLN3-219ENST00000565778 DNMT3LQ9UJW3 386 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 USP3Q9Y6I4 520 aa21.83■■□□□ 1.09
CLN3-219ENST00000565778 EP300Q09472 2414 aaPredicted RBP21.82■■□□□ 1.08
CLN3-219ENST00000565778 MYH10P35580 1976 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 EIF2DP41214 584 aaKnown RBP21.82■■□□□ 1.08
CLN3-219ENST00000565778 UBE2HP62256 183 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 CAMK4Q16566 473 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 SGO2Q562F6 1265 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.82■■□□□ 1.08
CLN3-219ENST00000565778 SCD5Q86SK9 330 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 TADA2BQ86TJ2 420 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 TMEM25Q86YD3 366 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 USP33Q8TEY7 942 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 SRRTQ9BXP5 876 aaKnown RBP21.82■■□□□ 1.08
CLN3-219ENST00000565778 ARHGEF4Q9NR80 690 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 SPHK2Q9NRA0 654 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms