RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 NMUR1Q9HB89 426 aa19.4■□□□□ 0.7
CLN3-214ENST00000565140 PNPLA8Q9NP80 782 aa19.4■□□□□ 0.7
CLN3-214ENST00000565140 TLR8Q9NR97 1041 aaKnown RBP19.4■□□□□ 0.7
CLN3-214ENST00000565140 MYO18AQ92614 2054 aaKnown RBP19.4■□□□□ 0.7
CLN3-214ENST00000565140 TLR5O60602 858 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 LILRB5O75023 590 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 NFATC1O95644 943 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 CYP17A1P05093 508 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 DMWDQ09019 674 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 NR1H3Q13133 447 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 ARHGAP17Q68EM7 881 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 TRIM59Q8IWR1 403 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 KIAA1958Q8N8K9 716 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 SUMF1Q8NBK3 374 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 EML5Q05BV3 1969 aa19.39■□□□□ 0.69
CLN3-214ENST00000565140 A0A1W2PQH9 124 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 E2F8A0AVK6 867 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 K7ESF4 209 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 DRD1P21728 446 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 OPRD1P41143 372 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 MARSP56192 900 aaKnown RBP19.38■□□□□ 0.69
CLN3-214ENST00000565140 KCNH2Q12809 1159 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 DHCR24Q15392 516 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 RHBDF2Q6PJF5 856 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 SCD5Q86SK9 330 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 TTC30AQ86WT1 665 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 DDX42Q86XP3 938 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-214ENST00000565140 ANKRD52Q8NB46 1076 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 KAT5Q92993 513 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 CD101Q93033 1021 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 FAM126AQ9BYI3 521 aaPredicted RBP19.38■□□□□ 0.69
CLN3-214ENST00000565140 CYLDQ9NQC7 956 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 USP3Q9Y6I4 520 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 DMXL1Q9Y485 3027 aa19.38■□□□□ 0.69
CLN3-214ENST00000565140 SLC9A3R1O14745 358 aaPredicted RBP19.37■□□□□ 0.69
CLN3-214ENST00000565140 RNF40O75150 1001 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 PAPSS2O95340 614 aaPredicted RBP19.37■□□□□ 0.69
CLN3-214ENST00000565140 GNA14O95837 355 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 IRF1P10914 325 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 TBXAS1P24557 533 aaPredicted RBP19.37■□□□□ 0.69
CLN3-214ENST00000565140 PPP2R5DQ14738 602 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 CCDC186Q7Z3E2 898 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 NT5C1BQ96P26 610 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 KLF16Q9BXK1 252 aaPredicted RBP19.37■□□□□ 0.69
CLN3-214ENST00000565140 UBXN6Q9BZV1 441 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 NACA2Q9H009 215 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 CLSTN2Q9H4D0 955 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-214ENST00000565140 POLR3BQ9NW08 1133 aaPredicted RBP19.37■□□□□ 0.69
CLN3-214ENST00000565140 RWDD2AQ9UIY3 292 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 NUDT5Q9UKK9 219 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 SDK1Q7Z5N4 2213 aa19.37■□□□□ 0.69
CLN3-214ENST00000565140 SPAG17Q6Q759 2223 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 CHURC1-FNTBB4DL54 471 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 RNF225M0QZC1 329 aaPredicted RBP19.36■□□□□ 0.69
CLN3-214ENST00000565140 TULP2O00295 520 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 P4HA2O15460 535 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 RARGP13631 454 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 ATP5C1P36542 298 aaKnown RBP19.36■□□□□ 0.69
CLN3-214ENST00000565140 FNTBP49356 437 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 NRLP54845 237 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 YWHAEP62258 255 aaKnown RBP19.36■□□□□ 0.69
CLN3-214ENST00000565140 GOLGA7BQ2TAP0 167 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 SGO2Q562F6 1265 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 PIGZQ86VD9 579 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 ARHGEF19Q8IW93 802 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 BBS7Q8IWZ6 715 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 PPM1KQ8N3J5 372 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 EHBP1Q8NDI1 1231 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 TBC1D14Q9P2M4 693 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 TSPAN16Q9UKR8 245 aa19.36■□□□□ 0.69
CLN3-214ENST00000565140 ANTXRLA6NF34 631 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 MDM4O15151 490 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 GREM1O60565 184 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 AFPP02771 609 aaKnown RBP19.35■□□□□ 0.69
CLN3-214ENST00000565140 CD19P15391 556 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 SLC6A11P48066 632 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 PDE4CQ08493 712 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 MESP2Q0VG99 397 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 RAB41Q5JT25 222 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 HEATR6Q6AI08 1181 aaKnown RBP19.35■□□□□ 0.69
CLN3-214ENST00000565140 TMEM270Q6UE05 265 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 CLEC17AQ6ZS10 378 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 RRAGAQ7L523 313 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 UBA3Q8TBC4 463 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 TFAP2BQ92481 460 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 NAGPAQ9UK23 515 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 SH3BP1Q9Y3L3 701 aa19.35■□□□□ 0.69
CLN3-214ENST00000565140 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLN3-214ENST00000565140 RALGAPA1Q6GYQ0 2036 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 K7EQS6 105 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 FGFR1OPO95684 399 aaKnown RBP19.34■□□□□ 0.69
CLN3-214ENST00000565140 CALCAP01258 141 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 CCDC192P0DO97 292 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 VDRP11473 427 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 CETN1Q12798 172 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 LY6G5CQ5SRR4 150 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 HTR3DQ70Z44 454 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 C12orf40Q86WS4 652 aa19.34■□□□□ 0.69
CLN3-214ENST00000565140 IRF2BP1Q8IU81 584 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms