RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ZNF143P52747 638 aaPredicted RBP13.43□□□□□ -0.26
CLK3-214ENST00000564096 RNASE9P60153 205 aaKnown RBP13.43□□□□□ -0.26
CLK3-214ENST00000564096 TWF1Q12792 350 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 ACAP1Q15027 740 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 LRIT3Q3SXY7 679 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 SDHAF4Q5VUM1 108 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 PM20D1Q6GTS8 502 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 SYT10Q6XYQ8 523 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 BEND5Q7L4P6 421 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 TADA2BQ86TJ2 420 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 UBL4BQ8N7F7 174 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 NIPA2Q8N8Q9 360 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 LRRC57Q8N9N7 239 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 KREMEN2Q8NCW0 462 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 KIF18AQ8NI77 898 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 CLEC4CQ8WTT0 213 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 OVCA2Q8WZ82 227 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 GBF1Q92538 1859 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 PIWIL1Q96J94 861 aaKnown RBP13.43□□□□□ -0.26
CLK3-214ENST00000564096 CDK5RAP1Q96SZ6 601 aaKnown RBP13.43□□□□□ -0.26
CLK3-214ENST00000564096 CDCA3Q99618 268 aaPredicted RBP13.43□□□□□ -0.26
CLK3-214ENST00000564096 CNPY3Q9BT09 278 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 IRX2Q9BZI1 471 aaPredicted RBP13.43□□□□□ -0.26
CLK3-214ENST00000564096 CRISPLD1Q9H336 500 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 PLEKHA4Q9H4M7 779 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 TMEM51Q9NW97 253 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLK3-214ENST00000564096 TMEM59LQ9UK28 342 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 AMFRQ9UKV5 643 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLK3-214ENST00000564096 ASB3Q9Y575 518 aa13.43□□□□□ -0.26
CLK3-214ENST00000564096 C2CD4BA6NLJ0 364 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 GRAP2O75791 330 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 SOAT2O75908 522 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 RNF8O76064 485 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 GJB6O95452 261 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 SEC24AO95486 1093 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 FTCDO95954 541 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 SRGAP2BP0DMP2 458 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 RALAP11233 206 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 RFC1P35251 1148 aaPredicted RBP13.42□□□□□ -0.26
CLK3-214ENST00000564096 IRS1P35568 1242 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 MATKP42679 507 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 PTPN9P43378 593 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 CLCN4P51793 760 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 YWHAGP61981 247 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLK3-214ENST00000564096 RPL7AP62424 266 aaKnown RBP13.42□□□□□ -0.26
CLK3-214ENST00000564096 PPM1LQ5SGD2 360 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 BTBD8Q5XKL5 378 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 SLFN11Q7Z7L1 901 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 MON1AQ86VX9 555 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 EMC1Q8N766 993 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 JOSD2Q8TAC2 188 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 SCAMP5Q8TAC9 235 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 HDAC7Q8WUI4 952 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 ZNF592Q92610 1267 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 TRMT2BQ96GJ1 504 aaKnown RBP13.42□□□□□ -0.26
CLK3-214ENST00000564096 SLC2A13Q96QE2 648 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 TTLL2Q9BWV7 592 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 TLR8Q9NR97 1041 aaKnown RBP13.42□□□□□ -0.26
CLK3-214ENST00000564096 ABCC13Q9NSE7 274 aa13.42□□□□□ -0.26
CLK3-214ENST00000564096 FAM92AA1XBS5 289 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 CCDC66A2RUB6 948 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 YJEFN3A6XGL0 299 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 E7ENQ6 273 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 PSTPIP1O43586 416 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 CLASP2O75122 1294 aaKnown RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 GABBR2O75899 941 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 NCAM1P13591 858 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 COMTP21964 271 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 HOXA9P31269 272 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 NOS2P35228 1153 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 FLT3P36888 993 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 SSR1P43307 286 aaKnown RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 PPP3CCP48454 512 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 SULT1E1P49888 294 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 CAMK1Q14012 370 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 RPS6KA1Q15418 735 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 HADHQ16836 314 aaKnown RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 RSRC2Q7L4I2 434 aaKnown RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 GIPC2Q8TF65 315 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 RNF139Q8WU17 664 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 RXFP2Q8WXD0 754 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 MRPL38Q96DV4 380 aaKnown RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 BTBD6Q96KE9 485 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 GCNAQ96QF7 691 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 WDR24Q96S15 920 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 FAM204AQ9H8W3 233 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 MAN1C1Q9NR34 630 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 OLA1Q9NTK5 396 aaKnown RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 IL37Q9NZH6 218 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 GMIPQ9P107 970 aa13.41□□□□□ -0.26
CLK3-214ENST00000564096 MAGED2Q9UNF1 606 aaPredicted RBP13.41□□□□□ -0.26
CLK3-214ENST00000564096 COL4A4P53420 1690 aaPredicted RBP13.4□□□□□ -0.26
CLK3-214ENST00000564096 XYLBO75191 536 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 FGF19O95750 216 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 HNRNPA1P09651 372 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLK3-214ENST00000564096 RDXP35241 583 aaKnown RBP13.4□□□□□ -0.26
CLK3-214ENST00000564096 PCK1P35558 622 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 TAF10Q12962 218 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms