RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 YJEFN3A6XGL0 299 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 E7ENQ6 273 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 PGRMC1O00264 195 aaKnown RBP14.57□□□□□ -0.08
CLK3-209ENST00000562670 C2CD2LO14523 706 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 RIOK3O14730 519 aaKnown RBP14.57□□□□□ -0.08
CLK3-209ENST00000562670 SLU7O95391 586 aaKnown RBP14.57□□□□□ -0.08
CLK3-209ENST00000562670 USP17L7P0C7H9 530 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 PTPN7P35236 360 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 MARCKSL1P49006 195 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 PSEN1P49768 467 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 ARPP19P56211 112 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 TAS2R40P59535 323 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 ERVK-21P61565 698 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 TUBB4BP68371 445 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 DUSP4Q13115 394 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 MGAT5BQ3V5L5 792 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 PDE12Q6L8Q7 609 aaKnown RBP14.57□□□□□ -0.08
CLK3-209ENST00000562670 DENND5BQ6ZUT9 1274 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 RTL10Q7L3V2 364 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 VSIG1Q86XK7 387 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 CPNE8Q86YQ8 564 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 SCN4BQ8IWT1 228 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 TCEAL8Q8IYN2 117 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 TTC9BQ8N6N2 239 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 ARFGAP1Q8N6T3 406 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 EXD1Q8NHP7 514 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 TEKT4Q8WW24 435 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 OVCA2Q8WZ82 227 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 NAP1L3Q99457 506 aaPredicted RBP14.57□□□□□ -0.08
CLK3-209ENST00000562670 NPY6RQ99463 290 aa14.57□□□□□ -0.08
CLK3-209ENST00000562670 NGRNQ9NPE2 291 aaKnown RBP14.57□□□□□ -0.08
CLK3-209ENST00000562670 FSCN2O14926 492 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 MDM4O15151 490 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 TEX28O15482 410 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 SRGAP2O75044 1071 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 GRAP2O75791 330 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 FYNP06241 537 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 ADH1AP07327 375 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 RPL17P18621 184 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 ATF6P18850 670 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 BMP8BP34820 402 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 PAFAH1B1P43034 410 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 AIF1P55008 147 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 RNASE9P60153 205 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 COPS2P61201 443 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 SMC1AQ14683 1233 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 DDR2Q16832 855 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 SEL1L2Q5TEA6 688 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 OTUD1Q5VV17 481 aaPredicted RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 MON1AQ86VX9 555 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 PSTKQ8IV42 348 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 DEFB106AQ8N104 65 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 SCAMP5Q8TAC9 235 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 SPPL3Q8TCT6 385 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 FAM172AQ8WUF8 416 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 TRMT2BQ96GJ1 504 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 RBM41Q96IZ5 413 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 CFAP57Q96MR6 1250 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 TGS1Q96RS0 853 aaKnown RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 PSMB7Q99436 277 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 SEPT5Q99719 369 aaPredicted RBP14.56□□□□□ -0.08
CLK3-209ENST00000562670 EMILIN2Q9BXX0 1053 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 TLR9Q9NR96 1032 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 ABCC13Q9NSE7 274 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 CLIC5Q9NZA1 410 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 USP18Q9UMW8 372 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 YIPF1Q9Y548 306 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 MYO16Q9Y6X6 1858 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 GREB1Q4ZG55 1949 aa14.56□□□□□ -0.08
CLK3-209ENST00000562670 GBF1Q92538 1859 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 ZNF487B1APH4 448 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 ZNF185O15231 689 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 IGLV3-25P01717 112 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 CA3P07451 260 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 YWHAQP27348 245 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 MIPP30301 263 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 CXCR5P32302 372 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 RDXP35241 583 aaKnown RBP14.55□□□□□ -0.08
CLK3-209ENST00000562670 GTF2F1P35269 517 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLK3-209ENST00000562670 RABGGTBP53611 331 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 HDAC4P56524 1084 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 PLD1Q13393 1074 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 RAB30Q15771 203 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 PPP2R5EQ16537 467 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 PTPROQ16827 1216 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 C15orf59Q2T9L4 293 aaPredicted RBP14.55□□□□□ -0.08
CLK3-209ENST00000562670 BOLA3Q53S33 107 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 CCDC181Q5TID7 509 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 BSPRYQ5W0U4 402 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 MSANTD2Q6P1R3 559 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 HFE2Q6ZVN8 426 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 CYP4V2Q6ZWL3 525 aaPredicted RBP14.55□□□□□ -0.08
CLK3-209ENST00000562670 TMC7Q7Z402 723 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 ZNF276Q8N554 614 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 MYRIPQ8NFW9 859 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 MYRFLQ96LU7 910 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 TCF25Q9BQ70 676 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 C17orf80Q9BSJ5 609 aa14.55□□□□□ -0.08
CLK3-209ENST00000562670 UBE2OQ9C0C9 1292 aaKnown RBP14.55□□□□□ -0.08
CLK3-209ENST00000562670 FBXW11Q9UKB1 542 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms