RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZNF598Q86UK7 904 aaKnown RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 FAM35AQ86V20 835 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 DNAAF5Q86Y56 855 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 RFX6Q8HWS3 928 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 CCNJLQ8IV13 435 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 PPIL6Q8IXY8 311 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 PDIK1LQ8N165 341 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ANKLE1Q8NAG6 615 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 SLC35B2Q8TB61 432 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 FBXO25Q8TCJ0 367 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 FAM172AQ8WUF8 416 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 RNF25Q96BH1 459 aaPredicted RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 FAM149B1Q96BN6 582 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 RTP4Q96DX8 246 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 RNF157Q96PX1 679 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 SLC2A13Q96QE2 648 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 VAT1Q99536 393 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 COLEC11Q9BWP8 271 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 CALN1Q9BXU9 219 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 TXLNGYQ9BZA5 131 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 TRPV6Q9H1D0 765 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 DPH5Q9H2P9 285 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 NGRNQ9NPE2 291 aaKnown RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 OLA1Q9NTK5 396 aaKnown RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 FAM49BQ9NUQ9 324 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 KLK14Q9P0G3 267 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 HSFX1Q9UBD0 423 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 HMGXB4Q9UGU5 601 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ADAM21Q9UKJ8 722 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 TPX2Q9ULW0 747 aaKnown RBP7.84□□□□□ -1.15
VPS39-204ENST00000561818 MAFFQ9ULX9 164 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 PLAAQ9Y263 795 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ATP8A1Q9Y2Q0 1164 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 PTPN22Q9Y2R2 807 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 ACTL7BQ9Y614 415 aa7.84□□□□□ -1.15
VPS39-204ENST00000561818 A0A087WUV0 522 aaPredicted RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 ESYT3A0FGR9 886 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 BCLAF3A2AJT9 711 aaKnown RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 DCDC2CA8MYV0 355 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 CHADO15335 359 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 PAPSS1O43252 624 aaPredicted RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 CDH16O75309 829 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 AP1G2O75843 785 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 OAZ2O95190 189 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 TTC4O95801 387 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ZBED1O96006 694 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 PFKMP08237 780 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 CFHP08603 1231 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 MYBL2P10244 700 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ELNP15502 786 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 KLRC2P26717 231 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ADORA2BP29275 332 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ECHS1P30084 290 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 GJC1P36383 396 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 MAGEA11P43364 429 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 RPL21P46778 160 aaKnown RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 SCNN1GP51170 649 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 EIF3EP60228 445 aaKnown RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 COG7P83436 770 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 SKOR1P84550 965 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 CREMQ03060 361 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 DSC1Q08554 894 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 HIC1Q14526 733 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 PDK1Q15118 436 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 PKN2Q16513 984 aaKnown RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 PTPROQ16827 1216 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 KLHL38Q2WGJ6 581 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 KRT71Q3SY84 523 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 CCDC14Q49A88 953 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 DNAJC21Q5F1R6 531 aaKnown RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 RAB41Q5JT25 222 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 CEP85LQ5SZL2 805 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 IZUMO3Q5VZ72 239 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 WSCD1Q658N2 575 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 SLC9A4Q6AI14 798 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ZNF280DQ6N043 979 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 TTC27Q6P3X3 843 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 FAM171BQ6P995 826 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 KDM7AQ6ZMT4 941 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ADAT2Q7Z6V5 191 aaKnown RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 PIGZQ86VD9 579 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 NPAS4Q8IUM7 802 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 SPATA2LQ8IUW3 424 aaPredicted RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 GPR65Q8IYL9 337 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 FUKQ8N0W3 1084 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 LZTR1Q8N653 840 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 C12orf29Q8N999 325 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 JOSD2Q8TAC2 188 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 UBA3Q8TBC4 463 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 WNT8BQ93098 351 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 NT5C3BQ969T7 300 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 ZIM3Q96PE6 472 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 EPAS1Q99814 870 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 TRIM51Q9BSJ1 452 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 NAT9Q9BTE0 207 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 C11orf84Q9BUA3 381 aaPredicted RBP7.83□□□□□ -1.16
VPS39-204ENST00000561818 FAM204AQ9H8W3 233 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 KRT82Q9NSB4 513 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 GRHL1Q9NZI5 618 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 CYTH4Q9UIA0 394 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms