RNA–Protein interactions for RNA: ENST00000559043.1

CDC42BPB-204, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 5

Gene CDC42BPB, Length 1,999 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-204ENST00000559043 PKDCCQ504Y2 493 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 ARHGAP17Q68EM7 881 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 DENND1BQ6P3S1 775 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 SPATA31D4Q6ZUB0 917 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 C1orf131Q8NDD1 294 aaKnown RBP16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 KRT35Q92764 455 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 NUP85Q9BW27 656 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 NGRNQ9NPE2 291 aaKnown RBP16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 CALCOCO1Q9P1Z2 691 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 TSPAN16Q9UKR8 245 aa16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.65■□□□□ 0.26
CDC42BPB-204ENST00000559043 GOLGA6L10A0A0M3HER8 536 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 TULP2O00295 520 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 SHOX2O60902 331 aaPredicted RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 MICAL2O94851 1124 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 SEC24AO95486 1093 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 CPB1P15086 417 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 BDNFP23560 247 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 CYP2F1P24903 491 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ZNF211Q13398 564 aaPredicted RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 HLTFQ14527 1009 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 MESDQ14696 234 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 CLEC16AQ2KHT3 1053 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 TTMPQ5BVD1 217 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 SMYD5Q6GMV2 418 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 LILRA6Q6PI73 481 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 LCLAT1Q6UWP7 414 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 DDX42Q86XP3 938 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ZNF677Q86XU0 584 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ZNF461Q8TAF7 563 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ZNF564Q8TBZ8 553 aaPredicted RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ARL8AQ96BM9 186 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 KCNK16Q96T55 309 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 CYTH4Q9UIA0 394 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 SLC27A5Q9Y2P5 690 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 COL4A4P53420 1690 aaPredicted RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 MTMR11A4FU01 709 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 SOAT2O75908 522 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 UNGP13051 313 aaPredicted RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 CTNNA2P26232 953 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ADCY1Q08828 1119 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 LEKR1Q6ZMV7 388 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 RBM23Q86U06 439 aaKnown RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 PASD1Q8IV76 773 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 DCP1BQ8IZD4 617 aaKnown RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ZMIZ2Q8NF64 920 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 ZNF653Q96CK0 615 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 FAM161BQ96MY7 647 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 OXCT2Q9BYC2 517 aaPredicted RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 NEUROG2Q9H2A3 272 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 FAM114A2Q9NRY5 505 aa16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 UTP11Q9Y3A2 253 aaKnown RBP16.64■□□□□ 0.25
CDC42BPB-204ENST00000559043 DAPK3O43293 454 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 ATMINO43313 823 aaPredicted RBP16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 GABBR2O75899 941 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 CTNNA1P35221 906 aaKnown RBP16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 MARCKSL1P49006 195 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 NDUFV1P49821 464 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 DUSP4Q13115 394 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 ADGRE1Q14246 886 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 GOLGA7BQ2TAP0 167 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 FAM35AQ86V20 835 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 LRRC45Q96CN5 670 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 SMOQ99835 787 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 RAB17Q9H0T7 212 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 ABI2Q9NYB9 513 aaPredicted RBP16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 CHORDC1Q9UHD1 332 aaPredicted RBP16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 PCDHGC3Q9UN70 934 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 SSX2IPQ9Y2D8 614 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 PCDHA3Q9Y5H8 950 aa16.63■□□□□ 0.25
CDC42BPB-204ENST00000559043 PTPRDP23468 1912 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 FAM187AA6NFU0 413 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 TMEM110-MUSTN1A8MSY1 372 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 TGM5O43548 720 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 CLASP2O75122 1294 aaKnown RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 KRT14P02533 472 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 GPD2P43304 727 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 GPR15P49685 360 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 DHX34Q14147 1143 aaKnown RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 NAA35Q5VZE5 725 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 LRIG3Q6UXM1 1119 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 ANKRD52Q8NB46 1076 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 MRPL38Q96DV4 380 aaKnown RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 MED10Q9BTT4 135 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 PRRC2BQ5JSZ5 2229 aaKnown RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 EYSQ5T1H1 3165 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 PLXNA3P51805 1871 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 ATF2P15336 505 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 KLRC2P26717 231 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 DR1Q01658 176 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 PDE4CQ08493 712 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 PDE12Q6L8Q7 609 aaKnown RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 SPATA2LQ8IUW3 424 aaPredicted RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 DUSP16Q9BY84 665 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 LMAN2LQ9H0V9 348 aa16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 AVENQ9NQS1 362 aaPredicted RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 AFF4Q9UHB7 1163 aaKnown RBP16.62■□□□□ 0.25
CDC42BPB-204ENST00000559043 PHF2O75151 1096 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms